CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  368 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 667
            KG+GYKG SFHRII  FM Q           G SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   44 KGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  368 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 667
            KG+GYKG SFHRII  FM Q           G SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM++V  +E
Sbjct:   44 KGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 69/118 (58.47%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YKG SFHR+I  FM Q           G SIYG+ F+DE+F+ KH GPGVLSMANAGP TNGSQFFICT KT WLD +HVVFG V++GMDVVR +E V  S++   K P +I + G+L
Sbjct:   33 YKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKV-GSQSGQTKKPVKIADCGQL 149          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = -2
Query:  368 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 667
            KG+GYKG SFHRII  FM Q           G SIYG  FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V +GM +V  +E
Sbjct:   44 KGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAME 143          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.884e-32
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            +KG  FHRII +FMIQ           G SIYG+ F+DE+F LKH GPG LSMANAGPNTNGSQFFICTV TPWLD  HVVFG V DGM VV+K+E +  SR+  P     I + GEL
Sbjct:   73 FKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKM-GSRSGAPAKTVTIADCGEL 189          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  368 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 667
            KG+GYKG  FHRII  FM Q           G SIYG  F+DE+F+LKH GPG+LSMANAGPNTNGSQFFICTVKT WLD +HVVFG V +GM++V  +E
Sbjct:   44 KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  368 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLE 667
            KG+GYKG  FHRII  FM Q           G SIYG  F+DE+F+LKH GPG+LSMANAGPNTNGSQFFICTVKT WLD +HVVFG V +GM++V  +E
Sbjct:   44 KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAME 143          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            +KG  FHRII +FMIQ           G SIYG  F DE+F  KH GPGVLSMANAGPNTNGSQFF+CTVKT WLD +HVVFG V++G+D+V K+E    S +  PK  C I + G+L
Sbjct:   55 FKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEG-NGSSSGTPKSECLIADCGQL 171          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 73/124 (58.87%), Postives = 84/124 (67.74%), Query Frame = -2
Query:  296 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 667
            K   YKG SFHRII  FM+Q           G SIYG  F DE+F LKH GPG LSMANAG +TNGSQFFI TV T WLD RHVVFG V+ GMDVV K+E+ E +++  PK    I++SGELPL
Sbjct:   82 KALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEA-EGNQSGTPKSKVVIVDSGELPL 204          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 71/121 (58.68%), Postives = 81/121 (66.94%), Query Frame = -2
Query:  302 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 664
            G+GYK  SFHRII  FM Q           G SIYG  FEDE+FVLKH GPG LSMANAG NTNGSQFFICT KT WLD +HVVFG V+ GM+VVR++E    S +  P     I++ GEL
Sbjct:  196 GFGYKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERC-GSASGKPSKRVVIVDCGEL 315          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIA_MOUSE3.539e-3265.00Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_CRIGR3.539e-3265.00Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYPH_ALLCE3.539e-3258.47Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPIA_RAT4.622e-3265.00Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
CYP1_CAEEL7.884e-3260.17Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_SAGOE1.030e-3164.00Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_AOTTR1.030e-3164.00Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYP7_CAEEL1.030e-3157.63Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CP20A_ARATH1.030e-3158.87Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIE_RHIOR1.345e-3158.68Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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