CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = -2
Query:  296 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 667
            KG+GY+G +FHR+IKDFMIQ           G SIYG+ FEDE+F L+H   GVLSMANAG +TNGSQFFI T  T WLD +HVVFG V++G D+V K++ V     D P    +I+  GEL +
Sbjct:   75 KGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGELDM 198          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GYKG  FHRII DFMIQ           G SIYGS F DE+FV KH   G+LSMANAGPNTNGSQFFI TV  PWLD +HVVFG V  GMD+V+ +ES  T+ +  P+    I  +GEL
Sbjct:   62 KGWGYKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTA-SGKPRAEIVIEEAGEL 182          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  305 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 667
            KG+G+KG SFHRII  FM Q           G SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD +HVVFG V +G+DV+R++E+ + S+   PK    I + GE
Sbjct:  180 KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 299          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.717e-31
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            +KG  FHR+I +FM Q           G SIYGS FEDE+F  KH GPG+LSMANAG NTNGSQFFICTVKT WLD +HVVFG V++G+DVV+ +E V +S +  P  P  + + G+L
Sbjct:   55 FKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSS-SGKPTKPVVVADCGQL 171          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = -2
Query:  305 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 667
            KG+G+KG SFHRII  FM Q           G SIYG  F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+   KT WLD +HVVFG V +G+DV+R++E+   S+   PK    I + GE
Sbjct:  180 KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA-RGSKDGKPKQKVIIADCGE 299          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 67/118 (56.78%), Postives = 79/118 (66.95%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YKG +FHR+I +FM Q           G SIYG  F DE FV K   PGVLSMANAGPNTNGSQFFICTV TPWLD +HVVFG V++GMDVV+ +E V T      KV  ++ + G+L
Sbjct:   55 YKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKV-VKVADCGQL 171          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 66/118 (55.93%), Postives = 81/118 (68.64%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YKG +FHR+I  FM Q           G SIYG+ F DE+FV KH GPG+LSMANAGP TNGSQFFICT KT WL+ +HVVFG V++GMDV++K E+V +S     K P  I + G+L
Sbjct:   55 YKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSK-PVVIADCGQL 171          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = -2
Query:  362 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 667
            K   YKG +FHRII  FM Q           G SIYGS FEDE+F LKH GPG+LSMAN+GPNTNGSQFFICT KT WLD +HVVFG V+DG +VV+ +E V
Sbjct:   51 KALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDV 152          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 65/110 (59.09%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  332 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV--ETSRTDYPKV 655
            YKG SFHR+I  FM Q           G SIYGS F+DE+F+ KH GPG+LSMANAG NTNGSQFFICT KT WLD +HVVFG V++G++VVR +E V  ++ RT  P V
Sbjct:   56 YKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVV 165          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 66/124 (53.23%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  293 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 664
            G GYKG  FHR+IK+FMIQ           G SIYG  F DE+F LKH  P  LSMANAG +TNGSQFFI TV T WLD +HVVFG V++G D+V  +E+  T     PKV   I ++GE+P++
Sbjct:   73 GKGYKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEIPVE 196          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIB_ARTBE6.675e-3153.23Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CYPC_YEAST6.675e-3158.20Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIE_HUMAN8.717e-3154.55Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
CP18C_ARATH8.717e-3155.93Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
PPIE_PONAB1.487e-3054.55Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
CYPH_MAIZE1.487e-3056.78Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_SOLLC2.536e-3055.93Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP19C_ARATH2.536e-3062.75Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CP19A_ARATH2.536e-3059.09Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIB_YARLI3.313e-3053.23Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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