CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.313e-30
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = -2
Query:  353 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS 655
            YK  SFHR+I  FM Q           G SIYG+ F DE+F+ KH GPG+LSMANAGPNTNGSQFFICT KT WLD +HVVFG V++GMDVV+ +E V +S
Sbjct:   55 YKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS 155          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 62/101 (61.39%), Postives = 74/101 (73.27%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG  FHR+I  FM+Q           G SIYG+ F DE+FV +H  PG+LSMANAGPNTNGSQFFI TV  PWLD +HVVFG V DG+D+V+K+ES
Sbjct:   42 KGFGYKGSIFHRVIPQFMLQGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIES 142          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.326e-30
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            Y+G  FHR+I  FM+Q           G SIYG+ F DE+F+ KH  PG+LSMANAGP TNGSQFFI TV TP LD +HVVFG V++GMDVVRK+E+ +T R D P    +I   G+L
Sbjct:   52 YEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSS-FEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYK   FHR+IKDFMIQ             +IYG+  F+DE+F+LKH  PG+LSMAN+GPNTNG QFFI T  TP+L+N+HVVFG V++GMDVVR +E+  T+R D P     II  GE+
Sbjct:   63 GYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTR-DKPNQDVTIIQCGEM 181          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-30
Identity = 69/118 (58.47%), Postives = 80/118 (67.80%), Query Frame = -2
Query:  302 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 655
            YK   FHRII +FMIQ           G SIYG  F DE+F +KH  PG+LSMANAGPNTNGSQFFI TV T WLD RH VFG VI+GMD+V+ LES+  S++  P    +I NSGEL
Sbjct:   81 YKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESI-GSQSGTPSKIAKISNSGEL 197          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 62/119 (52.10%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYK  +FHR+I  FM+Q             SIYG+ FEDE+F +KH GPG+LSMAN+GPNTNG QFFI T    +LD +H VFG VIDG+  VRK+E+V T   + PK+  RI   GE+
Sbjct:   61 GYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENVPTGANNRPKLQVRIAECGEM 179          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = -2
Query:  326 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV--ETSRTDYPKVPC 655
            YKG +FHR+I  FM Q           G SIYG  F+DE+FV KH GPG+LSM NAG NTNGSQFFICT KT WLD +HVVFG V++GMDVVR +E V  ++ RT    V C
Sbjct:   55 YKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTC 166          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYKG +FHR+IKDFMIQ             SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI   K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct:   59 GYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 63/119 (52.94%), Postives = 79/119 (66.39%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYKG +FHR+IKDFMIQ             SIY   F DE+F L+H  PG+LSMAN+GP+TNG QFFI   K  WLD +HVVFG +IDG+ V+RK+E+V T   + PK+P  I   GE+
Sbjct:   59 GYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  290 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 655
            YKG  FHR+IK FMIQ           G SIYG+ F+DE+F +KH  P +LSMANAGPNTNGSQFFI TV TP LD +HVVFG V++G  VVR++E++ T   D P     I++ GEL  DA
Sbjct:   62 YKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELTGDA 183          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYPH_CATRO3.313e-3061.39Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
PPIA_CANAL4.326e-3061.39Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CYPX_USEUD4.326e-3055.08Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIH_ASPOR5.650e-3055.00Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIB_DICDI5.650e-3058.47Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIH_CRYNE7.380e-3052.10Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
CYPH_BRANA7.380e-3058.04Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIH_HUMAN9.638e-3052.94Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN9.638e-3052.94Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPID_GIBZE9.638e-3054.92Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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