CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALPK (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALPA (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALCH (ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3 
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPL (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Lens) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -3 
Query:  468 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 683
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPH (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -3 
Query:  468 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 683
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203
[Close]
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPC (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Corby) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -3 
Query:  468 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 683
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_SALSV3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPK3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPA3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALCH3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPL3.848e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPH3.848e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPC3.848e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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