CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            IMI QP+G  EG A DVEI  +E+  +K  L ++ +KH G+  E+IE D  R  + S  EA EYGI+DKV+ T +
Sbjct:  129 IMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_NITEU (ATP-dependent Clp protease proteolytic subunit OS=Nitrosomonas europaea GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            +MI QP+G  +GQA+D+EI  KEI  +K+ L ++ AKH G+T + IE D  R  +     AV+YG++D VL + +  ++
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILALKSRLNEIMAKHTGQTVKAIERDTDRDNFLGAEAAVKYGLVDAVLTSREVKQE 214          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP+G  +GQATD+ I  KEI  +K EL  L A+H G++ E++ AD  R  + S  EA  YGIID ++
Sbjct:  119 IMIHQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_COLP3 (ATP-dependent Clp protease proteolytic subunit OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D EI  KEI  +K +L KL A+H G+T +++  D  R  + S   AVEYG++D +L
Sbjct:  144 VMIHQPLGGFQGQASDFEIHAKEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFLSAEAAVEYGLVDSIL 214          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_CHRSD (ATP-dependent Clp protease proteolytic subunit OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA D+EI  KEI N++ +L ++ AKH G+  E +  D  R  + + ++AVEYG+ID +L
Sbjct:  130 MMIHQPLGGYQGQAADIEIHTKEILNIRQQLNEILAKHTGQDAETVARDTDRDNFMNGTQAVEYGLIDAML 200          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_BRASB (ATP-dependent Clp protease proteolytic subunit OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            IM+ QP G  +GQATD+ +  +EI ++K  L ++Y KH G++ + IE  + R K+ +   A E+G+IDKV+  +K PED
Sbjct:  128 IMVHQPSGGFQGQATDIMLHAQEILSLKKRLNEIYVKHTGQSYKAIEDALERDKFLTAEAAAEFGLIDKVI--DKRPED 204          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_PSEAE (ATP-dependent Clp protease proteolytic subunit 2 OS=Pseudomonas aeruginosa GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 29/74 (39.19%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  459 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 680
            ++ QP G I+G A+++EI R+EI  +K  L +++A+  G+TPE+I AD  R  + +  EAV+YG+++K++ +E+
Sbjct:  121 LLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIVSER 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PSEMY (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas mendocina (strain ymp) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = -3
Query:  453 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 683
            +MI QP+G  +GQA+D+EI  KEI  ++  L +L A H G++ E IE D  R  + S   AVEYGI+D V    + P
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAVEYGIVDAVHEKRQMP 212          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_FUSNN (ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium nucleatum subsp. nucleatum GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -3
Query:  474 IMIKQPI--GRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            IMI QP+  G ++GQATD+ I   E+  +K  L +L AK+ GKT EQI  D  R  Y S  EAV YG+ID V
Sbjct:  119 IMIHQPLISGGLKGQATDISIHANELLKIKDRLAELLAKNTGKTKEQILRDTERDNYLSSEEAVNYGLIDSV 190          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_THEMA6.144e-1146.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NITEU6.144e-1140.51ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM6.144e-1147.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COLP36.144e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHRSD6.144e-1143.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRASB6.144e-1141.77ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PSEAE6.144e-1139.19ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PSEMY8.024e-1144.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FUSNN8.024e-1150.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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