CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLI (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain K12) GN=clpP PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLC (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL6 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6 GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL5 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOK1 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O1:K1 / APEC GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECOHS (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O9:H4 (strain HS) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECO57 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O157:H7 GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ECO24 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  456 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 683
            IMI QP+G  +GQATD+EI  KEI  +KA L K+ A++ G+   +IE D  R  Y S  EAV+YG+IDKVL  EKS
Sbjct:  119 IMIHQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKIEKDTDRDFYMSAQEAVKYGLIDKVL--EKS 192          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERPS (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pseudotuberculosis GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_ECOLI5.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLC5.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL65.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL55.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOK15.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOHS5.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO575.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO245.026e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC6.564e-1353.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPS8.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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