CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERPP (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis (strain Pestoides F) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERPN (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERPE (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERPA (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERP3 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PORGI (ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas gingivalis GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G ++GQA+D+EIA +EI  VK EL  + + H GK  EQ+E D  R  + +  EA+EYG+IDK+L
Sbjct:  147 VMIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKIL 217          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  429 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 683
            IMI QP+G  +GQA D+EI  KEI  +K  L  L A+H G+  ++I  D  R  + SP+EAVEYG+ID+V+    S  D G+V+D
Sbjct:  125 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV---DSSGDEGIVTD 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  450 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 683
            IMI QP+G  +GQATD+EI  KEI  ++ +L  + A H GKT ++IE+D  R  + S  EA +YG+ID+VL   +  E
Sbjct:  120 IMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEAQKYGLIDEVLVKREDVE 197          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMP (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            IMI QP+G  +GQA ++EI  KEI  +K  L  L AKH  ++ E+I  D  R  + SP EAVEYG+IDKV+  +K
Sbjct:  141 IMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKNDK 215          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP+G  +GQA ++EI  KEI  +K  L  L A+H G+  E+I  D  R  + SPSEAVEYG+IDKV+
Sbjct:  147 IMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVI 217          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_YERPP8.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPN8.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPE8.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPA8.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERP38.573e-1348.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PORGI8.573e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS91.120e-1247.06ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_DESPS1.462e-1246.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMP1.462e-1249.33ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP4_PROM91.910e-1252.11ATP-dependent Clp protease proteolytic subunit 4 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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