CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  +EI N+KA L +L A H G++ E I+ D  R  + S + A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAAEYGLIDSV 205          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_MOUSE (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Mus musculus GN=Clpp PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  171 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_HUMAN (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Homo sapiens GN=CLPP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  175 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_BOVIN (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Bos taurus GN=CLPP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G   GQATD+ I  +EI  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  171 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP+G  +GQA ++EI  KEI  +K  L  L A+H G++ E+I  D  R  + SP EAVEYG+IDKV+
Sbjct:  142 IMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_FRASC (ATP-dependent Clp protease proteolytic subunit 2 OS=Frankia sp. (strain CcI3) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  456 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 683
            I+I QP  + EGQ++D+EI  +EI  +++ L ++ A H GK  E I  DI R K FS  EA EYG+ID+V+ T KS
Sbjct:  135 ILIHQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKEYGLIDEVIKTRKS 210          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            IMI QP+G  +GQATD+EI  KEI  +KA L +  A H GK+ E+I AD  R  + S  E+ EYG+ID+V+    S  D
Sbjct:  118 IMIHQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVINRRPSASD 196          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  429 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 683
            IMI QP+G  +GQA D+EI  KEI  +K  L  L A+H G+  ++I  D  R  + SP+EAVEYG+ID+V+    S  D G++++
Sbjct:  125 IMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV---DSSGDGGIITE 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP1_GLUOX (ATP-dependent Clp protease proteolytic subunit 1 OS=Gluconobacter oxydans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            +M+ QP G  +GQA+D+EI  +EI  ++  L ++Y +H G+T EQIE  + R  Y S +EA E+G+IDKV+  E++P +
Sbjct:  133 VMVHQPSGGAQGQASDIEIQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLIDKVV--ERNPHE 209          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SULNB (ATP-dependent Clp protease proteolytic subunit OS=Sulfurovum sp. (strain NBC37-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G  +GQ+TD++I  +EI+ +K  L ++ A+  GKT ++IE D  R  + S  EAVEYG+IDKVL
Sbjct:  120 IMIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEAVEYGLIDKVL 190          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_PSEE45.557e-1248.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOUSE5.557e-1249.30Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP_HUMAN5.557e-1249.30Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP_BOVIN5.557e-1249.30Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP3_PROMA5.557e-1250.70ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_FRASC5.557e-1247.37ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNY35.557e-1248.10ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNSC5.557e-1244.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_GLUOX5.557e-1243.04ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SULNB7.257e-1249.30ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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