CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            IMI QP+G ++GQATD++I  +EI  ++  L +L  KH G+  E+IE D  R  + S +EA EYGIID+V+   K
Sbjct:  121 IMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVITVRK 195          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP3_ANAVT (ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  453 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 683
            IMI QP+G  +GQA D+EI  +EI  +KA+L +L A H G+  E+IEAD  R  + S  EA  YG+ID+V+  +  P
Sbjct:  128 IMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNLP 204          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_ANASP (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  453 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 683
            IMI QP+G  +GQA D+EI  +EI  +KA+L +L A H G+  E+IEAD  R  + S  EA  YG+ID+V+  +  P
Sbjct:  146 IMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNLP 222          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPF (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf0-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+EI  KEI  ++  L  L AKH G+T E+IE D  R  + S   A EYG+ID+V+
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVI 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            +MI QP+G  +GQAT++EIA   I   +A+L K+ A+  G++ EQIE D  R  + +  EA EYG+ID+V+  EK
Sbjct:  120 VMIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVMQPEK 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PSEF5 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+EI  KEI  ++  L  L AKH G+T E+IE D  R  + S   A EYG+ID+V+
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAREYGLIDEVI 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PHOPR (ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D++I  KEI  +K  L  L AKH G+  E +E D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAVEYGLVDSVL 195          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+ I  KEI +++  L ++ A+H G+  E+IE D  R  + S +EA EYG+IDKVL
Sbjct:  133 VMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAEYGLIDKVL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_AZOBR (ATP-dependent Clp protease proteolytic subunit OS=Azospirillum brasilense GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = -3
Query:  441 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHG 683
            IMI QP G  +GQA+D+EI  +EI  +++ L  +Y KH G++ + IEA + R K+ SP EA  +G+ID+V+  EK P   G
Sbjct:  128 IMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAXMERDKFMSPEEAKAFGLIDEVV--EKRPGSIG 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMT (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP+G  +GQA ++EI  KEI  +K  L  L A+H G+  ++I  D  R  + SP EAVEYG+IDKV+
Sbjct:  118 IMIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVV 188          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_CARHZ7.257e-1246.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANAVT7.257e-1246.75ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_ANASP7.257e-1246.75ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PSEPF9.479e-1247.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT1.238e-1145.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEF51.238e-1147.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHOPR1.238e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DECAR1.238e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOBR1.238e-1144.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMT1.238e-1149.30ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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