CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            I++ QP G   GQATD+ I  +E+   K  L +L + H GKT EQI+ D  R  Y SP EAV YG+IDKVL
Sbjct:  131 IILYQPYGGARGQATDINIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVL 201          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_VIBVY (ATP-dependent Clp protease proteolytic subunit OS=Vibrio vulnificus (strain YJ016) GN=clpP PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D++I  +EI  +K +L KL A+H G+  E IE D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 195          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_VIBVU (ATP-dependent Clp protease proteolytic subunit OS=Vibrio vulnificus GN=clpP PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D++I  +EI  +K +L KL A+H G+  E IE D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 195          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_EHRRW (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia ruminantium (strain Welgevonden) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G  +GQATD+EI  KEI N+K+ L  +Y KH G+   ++ A + R  + S   A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSAQDFGIIDKVI 190          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_EHRRG (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia ruminantium (strain Gardel) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G  +GQATD+EI  KEI N+K+ L  +Y KH G+   ++ A + R  + S   A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSAQDFGIIDKVI 190          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_VIBSL (ATP-dependent Clp protease proteolytic subunit OS=Vibrio splendidus (strain LGP32) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D++I  +EI  +K +L KL A+H G+  E +E D  R  + S  +AVEYG++D VL
Sbjct:  133 VMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGLVDSVL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_THIDA (ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+EI  KEI  +KA L  + AKH G++ E I+ D  R  + S  ++V+YG++DKVL
Sbjct:  134 VMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAEDSVKYGLVDKVL 204          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSF (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain FRC-32) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP+G  +GQATD+ I  +EI  +K +L +L A+H G+T E+IEAD  R  + S  +A  YGIID ++
Sbjct:  119 IMIHQPLGGFQGQATDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDYFMSGEDAKTYGIIDSII 189          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = -3
Query:  450 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 683
            IMI QP G  +GQ TD+ I  +EI+ ++  L +L AKH G+  E++  D  R ++ +P EA+EYG+ID +     +PE
Sbjct:  145 IMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKRPTPE 222          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_THICR (ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira crunogena (strain XCL-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+EI  KEI  +K +L K  A H G+  E IE D  R  + S  EA +YG++DKVL
Sbjct:  127 VMIHQPLGGFQGQASDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNFMSADEACDYGLVDKVL 197          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP2_GLOVI1.238e-1150.70ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_VIBVY1.617e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBVU1.617e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRRW1.617e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRRG1.617e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBSL2.112e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THIDA2.112e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSF2.112e-1147.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH2.112e-1141.03ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THICR2.758e-1147.89ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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