CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_RHOPT (ATP-dependent Clp protease proteolytic subunit OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            IM+ QP G  +GQATD+ +  +EI N+K  L ++Y  H G+T + IE  + R K+ +   A E+GI+DKV+  EK PED
Sbjct:  128 IMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDKFLTAEMAREFGIVDKVI--EKRPED 204          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_RHOPA (ATP-dependent Clp protease proteolytic subunit OS=Rhodopseudomonas palustris GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = -3
Query:  447 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 683
            IM+ QP G  +GQATD+ +  +EI N+K  L ++Y  H G+T + IE  + R K+ +   A E+GI+DKV+  EK PED
Sbjct:  128 IMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDKFLTAEMAREFGIVDKVI--EKRPED 204          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            IM+ QP+G   GQA+D+EI  +E+  +K  L  +Y KH GKT EQI+ D  R  Y +  EA  YGIID V+  ++
Sbjct:  120 IMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMM (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain St. Maries) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IM+ QP G   GQATD+EI  +EI  +K  L ++Y KH GK+ E+IE+ + R  +    +A ++GI+DKV+
Sbjct:  137 IMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKAKDFGIVDKVI 207          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ANAMF (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma marginale (strain Florida) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IM+ QP G   GQATD+EI  +EI  +K  L ++Y KH GK+ E+IE+ + R  +    +A ++GI+DKV+
Sbjct:  137 IMVHQPSGGFRGQATDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESSMERDNFMVAEKAKDFGIVDKVI 207          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            IMI QP G   GQATD+EI  +EI  V+ +L +LYA H G+  E+IE D+ R  + S  EA  YG+ID+V+
Sbjct:  123 IMIHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVI 193          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = -3
Query:  453 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 683
            IMI QP+G  +G ATD+EI  KEI  +K  L  L A H G+  E+IE D  R  + +P +A EYG+ID+V+     P
Sbjct:  118 IMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVISKRPQP 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = -3
Query:  453 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 683
            IMI QP+G  +G ATD+EI  KEI  +K  L  L A H G+  E+IE D  R  + +P +A EYG+ID+V+     P
Sbjct:  118 IMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVITRRPQP 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  459 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 683
            IM+ QP+G   GQA+D+EI  +E+  +K  L  +Y KH GKT EQI+ D  R  Y +  EA  YGIID V+  ++
Sbjct:  120 IMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPG (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD++I  +EI ++KA L +L A H G+  E I+ D  R  + S S A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDTERDNFMSASRAAEYGLIDSV 205          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPP_RHOPT2.758e-1144.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RHOPA2.758e-1144.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN2.758e-1145.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMM2.758e-1143.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAMF2.758e-1143.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_THEEB2.758e-1149.30ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJB2.758e-1145.45ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA2.758e-1145.45ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_LEPIC2.758e-1145.33ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PSEPG3.602e-1147.14ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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