CB304797

Overview
NameCB304797
Unique NameCB304797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10655 contig Csv1_Contig10655:236..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: ESS1_YEAST (Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccharomyces cerevisiae GN=ESS1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = -3 
Query:  276 TRESAVSQLQAI--RDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 524
            +++ A  +L+ +  R D  S    F+ +A   SDCSS KRGGDLG FGRG+MQ  FE+A + LK+GE+S++V++ SGVH+I R G
Sbjct:   86 SKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIKRVG 170
[Close]
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_SCHPO (Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizosaccharomyces pombe GN=pin1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.013e-15
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = -3 
Query:  282 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 524
            ++E A    +     + SG     ++A + SDCSSA+RGG+LG FGR +MQKPFE+A + LK GEIS VV+T SG H+I R
Sbjct:   93 SKEEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQR 173
The following BLAST results are available for this feature:
BLAST of CB304797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ESS1_YEAST6.919e-1648.24Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccha... [more]
PIN1_SCHPO2.013e-1549.38Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304797 ID=CB304797; Name=CB304797; organism=Citrus sinensis; type=EST; length=550bp
TTTNNNTTTTTTTTTNNNTTTTTTTTTTTTNNGTAACCAAACGAGGTGAA
TTTTTTGGAGTCATTCAAGCAGATCCCAAACCACAATCAGCCATGTATAA
ACTACATGCTTTAAGAAAACAACTCCAACGAGCCAAATATAGCATGGCTC
GCCAGCATTATCATAAGAAGACCAACATTCATCTGAAGTAAAACCAACGA
CAACATTCTTGAATATGTTTCCAGAATATACTGAACAAATCAGTTAATCC
ATTATGAGCTTATCATTAATAATCAACCAGTCCTCATGATAAGGTGAACC
CCACTATCAGTATCCACAACTTCACTTATCTCACCAATTTTAAGATTATA
TGTTGCCTCCTCAAAAGGCTTCTGCATCTGGCCTCGACCAAAATTACCGA
GATCACCGCCGCGTTTGGCGGAGCTGCAATCGGAGAGGCGAGAGGCGACT
TCATCGAACTTGGCCTTGCCGGAAACGATGTCGTCTCGGATGGCTTGGAG
TTGAGAGACGGCGCTCTCTCTAGTGGTGTTGCTGATGACTCTACCTTCCC
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