CB304810

Overview
NameCB304810
Unique NameCB304810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304810_ssr316 microsatellite CB304810_ssr316:316..330. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:149..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = -1
Query:  417 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEA 593
            +AF  +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+  VN A
Sbjct:   53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            + F  +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR   VN A+
Sbjct:  248 QLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            E F   G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+  V+ A+
Sbjct:  225 ELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            + F  +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR   VN A+
Sbjct:  262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            + F  +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR   VN A+
Sbjct:  167 QLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
The following BLAST results are available for this feature:
BLAST of CB304810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GRP2_ARATH2.122e-1154.24Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC4_NICSY4.728e-1150.0031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY6.175e-1146.6729 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC3_ARATH8.065e-1148.3331 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL8.065e-1148.3328 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_C06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_C06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304810 ID=CB304810; Name=CB304810; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGATTAACCAAACAGGG
AGATCGAAACAACACAGGATAACAGGAACCGATCAAAACGACACAACATA
ACCCAAGGAAAATATCAAAACACGAAACCATAGCATAGCTCCTAATTTAT
CCTAAACAACACTAATTCCTCCAGCTGCCGCCATCAAAAGCACCGCTCCT
TGAGTATCGGGAACCACCATCACCGCCATATCCACCATCACGGCTGTAAC
CACCTTCACGGCGGCCACCATATCCTCCACCACCGCCACCTCCGTATCCG
CGGCTCCCACCGTATCCACCACCACCACCACTTTCACGGCGTCCACCACC
TCCATATCCGCCACCGCCGCGGCTTCCGTAACCACCACCGCCACCGCCAC
CGCTTCCGCGGGACTGGGCCTCGTTGACTGTGTTGTTACGGCCGTCGAGG
TTCTGGCCGTTCATGCCTTCGATCGCGTCCCTCATCGACTTCTCATCGCG
GAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGTCTCGCGATCGTTAA
TTATCTTCGATTCAAGGATATCGCCGTAAGCACCGAAGGCCTCATG
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