CB304814

Overview
NameCB304814
Unique NameCB304814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.449e-20
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.508e-20
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR + R+G+ +K   FVR +IREV  FAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    P+ + R+G+ +K   F R +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG+ VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  235 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFN---ALRKSRA 495
            KGH VTK    P+ + R G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N   A+RK+ A
Sbjct:   13 KGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAA 102          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH  T+  +  R    KG  SK+   VR ++RE+ GFAPYE+R+ E+ R+ KDKRALK  KR++GTH+RAK KREE+ N +   R
Sbjct:   15 KGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_MOUSE (60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -3
Query:  250 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNAL 495
            KGH VTK    PR + R+ + +    FVR +IREV GFAPYE+R  EL +V K KRALK  K+++GTH RAK+KREE+ N L
Sbjct:   13 KGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVL 94          
The following BLAST results are available for this feature:
BLAST of CB304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_PONAB1.110e-2056.9860S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN1.110e-2056.9860S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36_LAPHA1.449e-2056.9860S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_BOVIN1.893e-2056.9860S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]
RL36_RAT5.508e-2055.8160S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36_DANRE7.194e-2054.6560S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_CHICK7.194e-2055.8160S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_ICTPU9.395e-2055.5660S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_CAEEL1.039e-1850.0060S ribosomal protein L36 OS=Caenorhabditis elegan... [more]
RL36_MOUSE1.772e-1854.8860S ribosomal protein L36 OS=Mus musculus GN=Rpl36... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304814 ID=CB304814; Name=CB304814; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAACAATTAAATTTTTCT
CTGGAAAAAGGTAAAGGTCATTGTAGCACTCAAATTGACATCTTTAACTC
AGTTTTTGAAATGAAGGGGAAAAAAAGGCAAACAACATAGGCTAAAACAC
TGTGCTAAATTTAATAACCCAAGTTCAGGTGAACAAAACATCTAGCAAAG
TTATGCATCACTTCTTCTTCTCTCCACCTCCAGGGGCCCTACTCTTGCGA
AGGGCATTAAACATCTCCTCCCGCTTCTTCTTTGCCCTCTTGTGAGTGCC
AAGCTTTCTCTTTGCAACCTTCAGTGCCCTCTTGTCCTTGCCGACTCTAA
AAAGCTCAGTGATCCTTTTCTCATAGGGTGCAAAGCCAGCAACTTCCCTA
ATCACAGTCCTCACGAAGTGGACCCTTTTGCTTGTTTTCCCTTTGCGATC
TGCTGGGCGTGGCGGCAGTTCCTTCTTCGTCACAATATGACCCTTTGTTT
AATCCAACAAAGAGACCAGTATTTGGCTGTTTCGGAGCCATCACCTCCGA
CGAAACTGAGTTGCCGCGGAAACCTAAGATGAGTTGGAGTCCC
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