CB304814

Overview
NameCB304814
Unique NameCB304814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_CANAL (60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG   T KE+ P+ + RKG +S+R  FVR++++EVAG APYE+R+ EL R   +KRA K+AK++LGTHKRA +K EEM   + +SR
Sbjct:   12 KGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.890e-18
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH  T + + PR +  KG  SKR  FVR V++EVAG APYE+R+ EL R  KDKRA K+AK++LGT  RAK+K +E+   + +SR
Sbjct:   17 KGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102          

HSP 2 Score: 22.7126 bits (47), Expect = 1.890e-18
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  491 MAPKQP-NTGLFVGLNKG 541
            MA + P  TGL VGLNKG
Sbjct:    1 MAKEAPAKTGLAVGLNKG 18          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_DICDI (60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = -3
Query:  235 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRA 495
            KGH V K+ +      +K   +KRV  +R VIRE++GF+PYE+R++EL + G DKRALKVAK++LG+ +  KKKR+++ N  RK+ A
Sbjct:   20 KGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANINRKASA 104          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36B_YEAST (60S ribosomal protein L36-B OS=Saccharomyces cerevisiae GN=RPL36B PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG  VT+    P+ + +KG  S R  FVR+++RE+AG +PYE+R+ +L R   +KRA KVAK++LG+  RAK K EEM N +  SR
Sbjct:   13 KGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_DROME (60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGK----------TSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH  +K        D+K K           ++   F+R ++REV G APYEKR  EL +V KDKRALK  KR+LGTH RAK+KREE+ N L + R
Sbjct:   13 KGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36A_YEAST (60S ribosomal protein L36-A OS=Saccharomyces cerevisiae GN=RPL36A PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.968e-15
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG  VT     P+ + +KG  S R  FVR+++RE+AG +PYE+R+ +L R   +KRA KVAK++LG+  RAK K EEM N +  SR
Sbjct:   13 KGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36X_HUMAN (Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.188e-14
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH +TK    PR +   G+ +K    VR +I+EV GF PYE+   EL +V KDK+ALK  K+++GTH   K+KREE+ N L  +R
Sbjct:   13 KGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKREELSNVLAITR 98          
The following BLAST results are available for this feature:
BLAST of CB304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_CANAL1.772e-1852.3360S ribosomal protein L36 OS=Candida albicans GN=R... [more]
RL36_TRIHM1.890e-1852.3360S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_DICDI1.404e-1548.2860S ribosomal protein L36 OS=Dictyostelium discoid... [more]
RL36B_YEAST5.335e-1547.6760S ribosomal protein L36-B OS=Saccharomyces cerev... [more]
RL36_DROME6.968e-1546.8860S ribosomal protein L36 OS=Drosophila melanogast... [more]
RL36A_YEAST6.968e-1547.6760S ribosomal protein L36-A OS=Saccharomyces cerev... [more]
RL36X_HUMAN1.188e-1446.51Putative 60S ribosomal protein L36-like 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304814 ID=CB304814; Name=CB304814; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAACAATTAAATTTTTCT
CTGGAAAAAGGTAAAGGTCATTGTAGCACTCAAATTGACATCTTTAACTC
AGTTTTTGAAATGAAGGGGAAAAAAAGGCAAACAACATAGGCTAAAACAC
TGTGCTAAATTTAATAACCCAAGTTCAGGTGAACAAAACATCTAGCAAAG
TTATGCATCACTTCTTCTTCTCTCCACCTCCAGGGGCCCTACTCTTGCGA
AGGGCATTAAACATCTCCTCCCGCTTCTTCTTTGCCCTCTTGTGAGTGCC
AAGCTTTCTCTTTGCAACCTTCAGTGCCCTCTTGTCCTTGCCGACTCTAA
AAAGCTCAGTGATCCTTTTCTCATAGGGTGCAAAGCCAGCAACTTCCCTA
ATCACAGTCCTCACGAAGTGGACCCTTTTGCTTGTTTTCCCTTTGCGATC
TGCTGGGCGTGGCGGCAGTTCCTTCTTCGTCACAATATGACCCTTTGTTT
AATCCAACAAAGAGACCAGTATTTGGCTGTTTCGGAGCCATCACCTCCGA
CGAAACTGAGTTGCCGCGGAAACCTAAGATGAGTTGGAGTCCC
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