CB304826

Overview
NameCB304826
Unique NameCB304826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 41/108 (37.96%), Postives = 51/108 (47.22%), Query Frame = -3
Query:  205 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTD 465
            RGPIQ++ N NY  AG+AIG D L +P+ V  D  + FKTALWFWMT        H V+                 G+      I+G  ECG      V DR+  Y D
Sbjct:   82 RGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 43/124 (34.68%), Postives = 54/124 (43.55%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL  N NY E G  +G + L+ PE VA D V+SF+ ALWFWM          H V+                 GF      I    EC    + +  +R+  Y  YC    VDPG  L C
Sbjct:  175 RGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 46/124 (37.10%), Postives = 54/124 (43.55%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWM------TYVHSVLN---------------QGFSETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY   G  +    L  PE V  D VISFKTA+WFWM         H+V+                 G+      ING  ECG G       DR+  Y  YC   G   GS L+C
Sbjct:  200 RGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
The following BLAST results are available for this feature:
BLAST of CB304826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIT_AVESA5.343e-1237.96Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR9.114e-1234.68Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI6_POPTR4.523e-1137.10Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304826 ID=CB304826; Name=CB304826; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGC
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