CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.621e-32
Identity = 65/118 (55.08%), Postives = 97/118 (82.20%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI---KEGQTIVVGGASEANTKKPCC 567
            +F+NV RWL+ELRDHADS+IVIMM+GNK+DL HLRAV+ ++ ++ AE+EGL F+ETSA+EA+NVE+AFQTI++E+Y I+++K+L++ E A ++     +G+TI +  A+  NTK+ CC
Sbjct:   99 SFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAA-GNTKRACC 215          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 9.953e-32
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL+  NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 65/115 (56.52%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TFENV RWLKEL++H D NIV+M++GNK+DL+HL AV TED +SYAE+E L F+ETSALEA NVE AF  +L++IYRI SKK + +GE   +++ +G+ I V     A  K  CC
Sbjct:  100 TFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEVKNDVSALKKLGCC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 68/120 (56.67%), Postives = 93/120 (77.50%), Query Frame = -3
Query:  223 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTI-VVGGASEANTKK---PCC 570
            ++F+NV RWLKELR+HADSNIVIM++GNKTDL HLRAV+TE+AQ++A    LSFIETSA++A NVE+AFQT+L+EI+RI+S +SL +G+    +   GQT+ +    ++ N KK    CC
Sbjct:   96 SSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDG-VHPTAGQTLNIAPTMNDLNKKKSSSQCC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN--IKEGQTIVVGGASEANTKKPCC 567
            TFEN +RWLKELRDH D NIV+M+IGNK+DL+HL AV TED +S+AERE L F+ETSALEA NVE AF  +L++IYRI+SK+++ +G+   S+    +GQTI V   S    +  CC
Sbjct:  100 TFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCC 216          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RB11A_PONAB4.468e-3260.17Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.468e-3260.17Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.468e-3260.17Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.468e-3260.17Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA4.468e-3260.17Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RGP2_ORYSJ7.621e-3255.08Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11A_BOVIN9.953e-3260.17Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA1B_ARATH2.217e-3156.52Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT3_SCHPO1.100e-3056.67GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11D_LOTJA1.100e-3057.26Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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