CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ +  HA+ ++  M++ NK D+ H R V     +  A    + F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D++  R V     +  A    + F ETSA   IN+EKAF T+  +I +    K     EP   N+    T   GG +     K CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVK-----EPDRENVDISTT---GGGTGL---KKCC 199          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I  ++
Sbjct:  108 TFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I  ++
Sbjct:  108 TFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            TF     W+KEL+  A  NIVI + GNK DL   RAV  ++AQ+YA+   L F+ETSA  A+NV + F  I  ++
Sbjct:  108 TFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = -3
Query:  304 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY-RIISKKSLSSGE 567
            +FE+++ WL + R  +  ++  ++IGNK DL+  R V+T +A+ +AE+ GL F ETSA  A+NV++AF+    +I  ++ S   L S E
Sbjct:  111 SFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNE 199          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP---CC 567
            +F+ +S W+ E+R  +  NIVI +IGNK D K  R + TE+    A+   + F ETSA +  +VE  F  +  ++  +I + +L+     P      Q+I +G  ++   KKP   CC
Sbjct:   92 SFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKVLSLIKQGTLTVVNKKP------QSIQLGAPTQETPKKPKSECC 203          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:   98 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:   98 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:   98 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAB10_RAT2.549e-1133.04Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB10_DISOM2.549e-1133.91Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB5C_PONAB3.329e-1145.33Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN3.329e-1145.33Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA3.329e-1145.33Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB2B_DICDI3.329e-1138.20Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RABQ_DICDI4.348e-1132.20Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB1A_RAT4.348e-1135.14Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG4.348e-1135.14Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE4.348e-1135.14Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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