CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.676e-28
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  214 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL------SSGEPAPSNIKEGQTIVVGGASEANTKKPCCFSS 567
            TF+++ RWL+ELR HAD NIVIM+IGNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA N+E AF T+L+EI+ I++KK+L      S+G PA      G+ I+V G  +   +K  C SS
Sbjct:  102 TFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLT---GKKILVPGPGQVIPEKKACCSS 222          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.139e-27
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL----SSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TF+++ RWL+ELR+HAD NIVI++IGNK DL + R V TEDA+ +AE+EGL F+ETSALEA NVE AF T+L+EIY I++KKSL    S G    +++   + I+ G A E   K+  C
Sbjct:  104 TFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMC 222          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.537e-27
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TFEN +RWL+ELR H D NIV+M+IGNK DL+HL AV TE+A+++AERE L F+ETSAL+A NVE AF  +L++I++I+SK+S+  G  +     +G+TI V        +  CC
Sbjct:  100 TFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.259e-26
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE----PAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            TF+++ RWL+ELR HAD NIVIM+ GNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA  +E AF T+L+EI+ I++KK+L++ E      P+++   + +V G       KK CC S
Sbjct:  102 TFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 55/115 (47.83%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+++V RW+ ELR++AD NI IM++GNK+DL+HLR V+T++A+ ++E+  L+FIETSAL++ NVE AFQ IL++IY I+S+ S S+G P  +     +TI++   SE    K  C
Sbjct:  100 TYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTG-PQTTIDSNTETIILPTTSEPPAAKSGC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A  +AE  GL F+ETSAL++ NVE AFQT+L EI+  +SK+  +S   +   +   Q     G  E   K+ CC S
Sbjct:   99 TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQAGQDPGPGE---KRACCIS 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.080e-21
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S       +   Q     G  E   K+ CC S
Sbjct:   99 TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITLGSAQAGQEPGPGE---KRACCIS 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  ++       +  G      G  E   K+ CC S
Sbjct:   99 TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNARTNAVTLGSGPAGQELGPGE---KRACCIS 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = -3
Query:  223 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 570
            +TFENV RWL EL  H+D+ +  M+IGNK DL+ +RAV+ E+ +S AE EGL F+ETSAL++ NV+ AF+ ++ EIY  IS+K L+S +     +   +  +V   +E      CC
Sbjct:   98 STFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS-DSYKEELTVNRVSLVKNENEGTKTFSCC 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S  P  + I  G +   G       K+ CC +
Sbjct:   99 TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS--PRSNAIALG-SAQAGQEPGPGQKRACCIN 212          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RB11D_TOBAC6.676e-2852.42Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11A_LOTJA1.139e-2752.94Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH2.537e-2751.30Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11C_TOBAC1.259e-2649.59Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11A_DICDI7.639e-2447.83Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB25_MOUSE7.150e-2246.15Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN2.080e-2145.30Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN3.548e-2144.44Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA4_ARATH3.548e-2143.97Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_RABIT6.052e-2145.30Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
back to top