CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       AS  + +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNASHGSNQ 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            TF +++ WLK+ R +A+SN+ I++IGNK+D++  RAV+ E+ + +A+  GL F+ETSA  A NVE+AF    S+IY  I K
Sbjct:   92 TFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQK 172          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  235 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +
Sbjct:   93 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTI--VVGGASEANTKKPCCFS 567
            TF +++ WL++ R HA++N+ IM++GNK DL H RAV+ E+ + +A+  GL F+E SA  A NVE+AF      IY+ I          +   IK G  I    GGA  ++++   C S
Sbjct:   93 TFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES-YGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAB2A_PONAB8.465e-1539.64Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE8.465e-1539.64Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA8.465e-1539.64Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN8.465e-1539.64Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_DICDI8.465e-1546.91Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB2A_CANFA8.465e-1539.64Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RAT1.106e-1446.91Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT1.106e-1446.91Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_CHICK1.106e-1446.91Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2B_MAIZE1.886e-1437.82Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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