CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFS 567
            +F NV +WL E+  +A  N+  +++GNK+DL   + VATE A+++A+  G+ F+ETSA  A NV++AF  + + I      K   + +PA +N +     + G     N K  CC S
Sbjct:   95 SFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI------KDRMASQPAAANARPATVQIRG--QPVNQKTSCCSS 203          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +F NV +WL E+  +A  N+  +++GNK+DL   R V+T+ A+ +AE  G+ F+ETSA  A NVEKAF  + ++I     KK +++   AP   K G  +  G    +N    CC
Sbjct:   95 SFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI-----KKRMANAPVAP---KAGVKLTPGQQVPSNGGSKCC 201          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  325 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 567
            +F N+ +WLK+ R++A  +  IM++GNK+DLK  R V+T + + +AE+  + FIETSAL++ NVE AF  + + IY  + K
Sbjct:   98 SFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFK 178          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  223 TTFENVSRWLKELRDHADSNIVIMMIGNKTDL-KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 570
            ++F N+  W++ +  HA  N+  +++GNK D+ +  RAV T   Q+ A+  G+ F ETSA   +NVE+ F +I  +I + +S    +     P+ IK  QT    GA +A  K  CC
Sbjct:  101 SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSD---TDSRAEPATIKISQTDQAAGAGQATQKSACC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 36/101 (35.64%), Postives = 65/101 (64.36%), Query Frame = -3
Query:  268 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK-EGQTI 567
            +F NV +WL E+  +A+ ++  ++IGNK D+   + V+TE  ++ A+  G+ F+ETSA ++INVE+AF TI  EI + +  ++ ++    P  ++ +GQ I
Sbjct:   95 SFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPI 195          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D++  R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = -3
Query:  268 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEPAPSNIKEGQTI 567
            +F NV +WL E+  +A  N+  +++GNK DL   R V+ E  ++ A+  G+ F+ETSA +A NVEKAF T+  EI  R+ S+ + ++ +PA   ++ GQ +
Sbjct:   95 SFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMR-GQPV 194          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +F NV +WL E+  +A  N+  +++GNK+DL   RA+  E A+++A+  G+ F+ETSA +A NVE+AF  + + I      K   + +PA +N +   T+ + G   A  K  CC
Sbjct:   95 SFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI------KERMASQPAGNNARP-PTVQIRGQPVAQ-KNGCC 201          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  307 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 567
            +F  + +W+KEL++H   NIV+ + GNK DL  +R V  +DA+ YAE  G   +ETSA  AIN+E+ FQ I  +I  +  +++ +SG
Sbjct:   92 SFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSG 178          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = -3
Query:  286 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA----PSNI 567
            +F NV +WL E+  +A+ ++  +++GNK DL   RAV T  AQ+YA+  G+ F+ETSA E+INVE+AF  + + I     KKS +  + A    PSN+
Sbjct:   95 SFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAI-----KKSKAGSQAALERKPSNV 187          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YPTM2_MAIZE7.166e-1435.04GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPT1_PHYIN7.166e-1437.39Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RB11B_DICDI1.222e-1343.21Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
ARA3_ARATH1.596e-1334.19Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RABD1_ARATH6.067e-1335.64Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB10_CHICK6.067e-1333.91Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RIC1_ORYSJ7.923e-1338.61Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RBD2A_ARATH7.923e-1335.65Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB31_MOUSE7.923e-1341.38Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
YPTM1_MAIZE1.035e-1241.84GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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