CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  307 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 567
            +F  + +W+KEL++H   NIV+ + GNK DL  +R V  +DA+ YAE  G   +ETSA  AIN+E+ FQ I  +I  +   ++ +SG
Sbjct:   92 SFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHENGNSG 178          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:   96 SFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F  + +W+KEL++H   NIV+ + GNK DL  +R V  +DA+ YAE  G   +ETSA  AIN+E+ FQ I  +I
Sbjct:   92 SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  304 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 567
            ++ NV +WL+E+  HA  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:   95 SYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGE 182          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TFENV +WL+E+   A  N+  +++GNK+DL   + V    A+++A+   + F+ETSA ++ NVE+AF T+ +EI     K  L++ +P  +  K    +V G ++  + K  CC
Sbjct:   95 TFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI-----KNRLTASQPTQTVDK--NKVVPGSSAPISPKSGCC 202          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  271 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 567
            +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:   95 SFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRS 196          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  271 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 567
            +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:   95 SFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRS 196          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAB31_RAT1.035e-1241.38Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB10_PONAB1.351e-1233.91Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.351e-1233.91Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.351e-1233.91Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.765e-1233.91Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB31_HUMAN2.305e-1245.33Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB1C_HUMAN2.305e-1238.64Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI2.305e-1234.78Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB8B_RAT3.011e-1235.29Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE3.011e-1235.29Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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