CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 32/75 (42.67%), Postives = 50/75 (66.67%), Query Frame = -3
Query:  343 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 567
            +F+++  WL E+++HA  ++V+M++GNK D    RAV  EDA+  A+  GL F+ETSA   +NV+ AF  I  E+
Sbjct:  151 SFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +F  V  WL+E+  +A S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I   +S+++L+         ++   + + G S  NT   CC
Sbjct:   95 SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE---TTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV--VGGASEANTKKPCC 567
            +F NV +WL E+  +A  N+  +++GNK+DL   + V  + A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P   K G  +V    G    N    CC
Sbjct:   95 SFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPVPP--KPGGPVVRPTEGKPINNKSSSCC 203          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 34/115 (29.57%), Postives = 61/115 (53.04%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +F N+  W + ++ +A+  + ++++GNK DL   R V+TE  Q+ A++ G+ F+E S+   INVE+ F ++ + I   ++K   +       NI EG         E N+   CC
Sbjct:   98 SFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINIAEG---------EENSASKCC 203          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  271 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 567
            +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S S+G   P  I E ++
Sbjct:   95 SFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRS 196          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  271 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 567
            +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S S+G   P  I E ++
Sbjct:   95 SFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRS 196          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  271 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 567
            +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+E SA  ++NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:   95 SFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRS 196          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            +F N+  W++ +  HA  ++  M+IGNK D+   + V +   +S A+  G+ F+ETSA  +INVE+AF ++  +    I K+ + +    P  ++ G  +   GA+  N KK CC
Sbjct:  102 SFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKD----IKKRMIDTPNEQPQVVQPGTNL---GANN-NKKKACC 208          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  343 TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 570
            ++F+N+  WL E+ ++A  ++VIM++GNK D+   R + +ED ++ A   G+ F+ETSA   +NVE AF  I  E+
Sbjct:  116 SSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ NV  W++E++ +A   +  +++GNK DL+  + V T  A+ YA+  G+ F+E SA   +NVE+AF  + +EIYR         G   PS +  G     GG S    KK  C
Sbjct:   93 TYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYR------NHMGGSKPSVVNPGS----GGTSNTGGKKKFC 197          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAB26_BOVIN3.011e-1242.67Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
YPT1_YEAST3.932e-1233.04GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
YPTV1_VOLCA5.136e-1235.04GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RYL1_YARLI6.707e-1229.57Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8B_PONAB6.707e-1234.31Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_HUMAN6.707e-1234.31Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN6.707e-1234.31Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_DICDI6.707e-1232.17Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB37_HUMAN6.707e-1239.47Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RABG2_DICDI8.760e-1234.78Ras-related protein RabG2 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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