CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK    D +E++GA IV++AL AP   IA NA           KDS++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VL T+AI
Sbjct:  379 VGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNF-DEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK    D +E++GA IV++AL AP   IA NA           KDS++  GYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VL T+AI
Sbjct:  379 VGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNF-DEEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSDFNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.321e-35
Identity = 81/142 (57.04%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K  L +A+E++GA IV +AL AP   IAHNA            + E   G++A+T  Y +M   G++DPAKV R ALQNAAS+A M L T+AI
Sbjct:  380 VGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAAMYLTTEAI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.076e-35
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AAI EGIVPGGG AL+HL+  +    D L   +E++GA I+QKAL  P   IA NA           ++ E+  G+NAMT++YE+++ AG+IDP KVTR ALQNAAS+A MVL T+ I
Sbjct:  379 VGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSLS-GEEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLEFNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECI 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+ L+  + + K +L + +ER+ A I+ KAL AP   +A NA           K++    GYN +T K E+++ AG+IDPAKV R ALQNAAS+AGMVL T+A+
Sbjct:  381 VGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIRLAGKIESFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQGYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEAL 522          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 73/142 (51.41%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETEL++RKLRIEDA NAT AAIEEG+VPGGG  L+HL+  + +++  L  ADE+LG  IV +AL AP   IA NA           +D ++  GYNA+T +YE+++ +G++DPAKV R ALQ+AASVA ++L T+ +
Sbjct:  380 VGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKDFNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVL 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.235e-33
Identity = 77/142 (54.23%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  LVHL+  +     +    +E +GA IV++AL AP   IA NA           K+  +  GY+A  D+Y NM  AG++DPAKVTR ALQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.235e-33
Identity = 77/142 (54.23%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  LVHL+  +     +    +E +GA IV++AL AP   IA NA           K+  +  GY+A  D+Y NM  AG++DPAKVTR ALQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKPFDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+  +    ++   ++E  G+ IV +AL+AP   IA NA           K+ ++ TG+NA  +++ +M +AG++DPAKVTR ALQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPELETWANENLQSEELTGSLIVSRALLAPLKRIAENAGQNGAVIGERVKEKDFNTGFNAANNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HL+  + AIK  L D DE+ GA ++ +AL AP   IA NA           ++ ++  GY+AM  ++ +ML AGV DPAKV R ALQNAAS+A MVL T+ +
Sbjct:  380 VGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLAD-DEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELDFNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVL 520          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ANAVT3.685e-3657.7560 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP1.829e-3557.0460 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_SYNJA5.321e-3557.0460 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH601_GLOVI9.076e-3556.3460 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNY32.022e-3454.2360 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_SYNP61.712e-3351.4160 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_THEEB2.235e-3354.2360 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH601_THEVL2.235e-3354.2360 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH602_TRIEI2.920e-3351.4160 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_GLOVI2.920e-3354.9360 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
back to top