CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STRA3 (60 kDa chaperonin OS=Streptococcus agalactiae serotype III GN=groL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 74/142 (52.11%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++ KLRIEDA NAT AA+EEGIV GGG ALV++ + V A+K    + DE  G  IV +AL  P   IA+NA           K SE  TG+NA   ++ +M+  G+IDP KVTR ALQNAASVA ++L T+A+
Sbjct:  379 VGAATETELKEMKLRIEDALNATRAAVEEGIVSGGGTALVNVIEKVAALK---LNGDEETGRNIVLRALEEPVRQIAYNAGYEGSVIIERLKQSEIGTGFNAANGEWVDMVTTGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STRA1 (60 kDa chaperonin OS=Streptococcus agalactiae serotype Ia GN=groL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 74/142 (52.11%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++ KLRIEDA NAT AA+EEGIV GGG ALV++ + V A+K    + DE  G  IV +AL  P   IA+NA           K SE  TG+NA   ++ +M+  G+IDP KVTR ALQNAASVA ++L T+A+
Sbjct:  379 VGAATETELKEMKLRIEDALNATRAAVEEGIVSGGGTALVNVIEKVAALK---LNGDEETGRNIVLRALEEPVRQIAYNAGYEGSVIIERLKQSEIGTGFNAANGEWVDMVTTGIIDPVKVTRSALQNAASVASLILTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA N+T AA+EEGIV GGG AL+++ + V AI+    + DE  G  IV +A+  P   IA NA           K+ +   G+NA T ++ +M++AG++DP KVTR ALQNAASVA MVL T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALMNIYNKVAAIE---AEGDEATGVKIVLRAIEEPVRQIAQNAGLEGSIIVERLKNEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSALQNAASVAAMVLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 71/144 (49.31%), Postives = 97/144 (67.36%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED--ADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+++KLRIEDA  AT AA+EEGIVPGGG AL++    +PA+   +E    DE+ GA IV+KAL  P   IA NA           K+S    G++A+ +++ +M +AG++DP KVTR A+QNAAS A M+L T+A+
Sbjct:  380 VGAATETELKEKKLRIEDALAATKAAVEEGIVPGGGTALINA---IPALDKLIESLTGDEKTGAMIVRKALEEPLRQIAENAGLDGSVIVNKVKESPAGVGFDALNERFVDMFEAGIVDPTKVTRTAIQNAASAAAMLLTTEAV 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIK  L++ +E++GA IV++AL  P  LIA NA             ++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  435 VGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIK  L++ +E++GA IV++AL  P  LIA NA             ++    GYNA T KYE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  435 VGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCV 577          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STRE4 (60 kDa chaperonin OS=Streptococcus equi subsp. equi (strain 4047) GN=groL PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++ KLRIEDA NAT AA+EEGIV GGG AL+++ D V A++    D D   G  IV +AL  P   IA+NA           K+S    G+NA T ++ +M+  G+IDP KVTR ALQNAASVAG++L T+A+
Sbjct:  379 VGAATETELKEMKLRIEDALNATRAAVEEGIVAGGGTALINVMDKVAALE---LDGDAATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSAAGIGFNAATGEWVDMIATGIIDPVKVTRSALQNAASVAGLILTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 74/142 (52.11%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG A+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G  IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M L T+A+
Sbjct:  379 VGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 74/142 (52.11%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG A+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G  IV KAL AP   IA NA           K +E   G+NA T+++ NML+ G++DP KVTR ALQ+AASVA M L T+A+
Sbjct:  379 VGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 72/142 (50.70%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+++K R+EDA +AT AA+EEGIVPGGG AL+     V  + D+L D DER GA IV +AL  P   IA NA           +    + G+NA+T  YE+++ AGVIDPA VTR ALQNAAS+AG+++ T  +
Sbjct:  380 VGAATETELKEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDEL-DGDERTGARIVYRALEEPIRQIAENAGADGSIVVDKVRAQGDSIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVV 520          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRA33.340e-2952.1160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA13.340e-2952.1160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_GEOKA3.340e-2950.7060 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_ANATD3.340e-2949.3160 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
RUBB_BRANA4.363e-2948.95RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH4.363e-2948.95RuBisCO large subunit-binding protein subunit beta... [more]
CH60_STRE44.363e-2951.4160 kDa chaperonin OS=Streptococcus equi subsp. equ... [more]
CH60_STAES4.363e-2952.1160 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ4.363e-2952.1160 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_RUBXD4.363e-2950.7060 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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