CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 78/142 (54.93%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL   V          DE +GA +V +AL AP   IA NA           KD  + TGY+A  D + +M +AG++DPAKVTR ALQNAAS+AGMVL T+AI
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLIPVVTEWAQANLSGDELVGANLVARALGAPLRRIAENAGQNGSIVLERVKDKPFNTGYDAQNDAFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTEAI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33
Identity = 77/142 (54.23%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL   V          DE +GA +V +AL AP   IA NA           K+  +T GY+A  D Y +M +AG++DPAKVTR ALQNAAS+A MVL T+AI
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLMPAVTEWAQANLSGDELVGAMLVARALGAPLRRIAENAGQNGSIVLERVKEKPFTVGYDAQNDAYVDMFEAGIVDPAKVTRSALQNAASIASMVLTTEAI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLR+EDA NAT AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA           +  ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVL T+A+
Sbjct:  379 VGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSLSP-EEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLR+EDA NAT AA+ EGIVPGGG  L+HL+  + A+   L   +E+ GA IV  AL AP + IA NA           +  ++  G+NA T  YE+++ AG+IDPAKV R ALQNA S+AGMVL T+A+
Sbjct:  379 VGAATETELKDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSLSP-EEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEAL 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 81/146 (55.48%), Postives = 100/146 (68.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD----KLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+   P ++D     L+D +E  GA IV +AL AP   IA NA           K+ E+  GYNA + +Y +ML AG++DPAKVTR ALQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PQLEDWATGNLKD-EELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKEFNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N            K+ +++ GY+A T K+ NM ++G+IDPAKVTR ALQNA+S+AGM+L T+ +
Sbjct:  380 VGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNMYESGIIDPAKVTRSALQNASSIAGMILTTECL 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L+H++  +     +    DE LG  IV+KAL AP   IA NA           K+S++  GYNA T++  +M +AG+IDPAKVTR  LQNAAS+A M+L T+ I
Sbjct:  381 VGAATETEMKDRKLRLEDAVNATKAAVEEGIVPGGGTTLIHIAAELLEWVKETLTGDELLGGLIVEKALQAPLKKIALNAGENGSIIVERIKESDFEIGYNAATNEIVDMYEAGIIDPAKVTRSTLQNAASIASMILTTECI 522          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HLS  +    DK  + +E +GA IV+ +L AP   IA NA           K   +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_PROMS (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain AS9601) GN=groL2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HLS  +    DK  + +E +GA IV+ +L AP   IA NA           K   +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_PROM0 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HLS  +    DK  + +E +GA IV+ +L AP   IA NA           K   +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSPILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNJB2.920e-3354.9360 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH602_SYNJA6.504e-3354.2360 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_THEVL8.494e-3352.8260 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB8.494e-3352.8260 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH601_SYNY31.109e-3255.4860 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_GALSU1.892e-3251.4160 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_EMIHU1.892e-3252.8260 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH602_PROM91.892e-3252.8260 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROMS2.472e-3252.8260 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM02.472e-3252.8260 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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