CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    DK    +E +GA IV+ +L +P   IA NA           K   +  G+NA T  Y +M  AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.092e-31
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    D     +E +GA IV+ +L AP   IA NA           K   +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADATLSGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 74/142 (52.11%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA IV+ AL +P   IA NA           K      GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALGDWSSSNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 78/143 (54.55%), Postives = 97/143 (67.83%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++R+ RIEDA N+T AA++EG V GGG ALV   D   AIKD K E +DE+ G  IV +AL AP   IA NA           +  E   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++L T+A+
Sbjct:  379 VGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALV---DVEKAIKDLKGETSDEQTGINIVLRALSAPVRQIAENAGKDGAVVLNKLESQENEIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA NAT AA+EEGIVPGGG ALV   D V   K      ++++GA +V +AL AP  +IA+NA           K++E + GYNA TD YE++++AGVIDP KV R ALQNA S+AG++L T+A+
Sbjct:  380 VGAATEVEMKEKKARVEDALNATRAAVEEGIVPGGGVALVRAIDAVAKAKIT---GEQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKVKNTEGSFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAM 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_PHATR (60 kDa chaperonin, chloroplastic OS=Phaeodactylum tricornutum GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDH-VPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETE++D+KLR+EDA NAT AA+EEGIVPGGGA L HLS++ V   K+ L++ DE +GA I+ +A++AP   IA NA           +  E+  GYNA  + + NM   G++DPAKVTR  LQNA S+A M+L T+ I
Sbjct:  381 VGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATLTHLSENLVTWAKNNLKE-DELIGAMIISRAILAPLRRIAENAGINGPVIIEKVQQQEFEIGYNAAKNTFGNMYTEGIVDPAKVTRSGLQNATSIASMILTTECI 522          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPA-IKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+DRKLR+EDA NAT AA+EEGIVPGGG  + H++  +    K +++D +E  G  IV +AL AP   IA NA           ++  +  GY+A+ +K+ NM +AG++DPAKVTR ALQNAAS+ GMVL T+ +
Sbjct:  379 VGAATETELKDRKLRLEDAINATKAAVEEGIVPGGGTTIAHIAPQLEEWAKSQMKD-EELTGTMIVARALYAPLRRIADNAGANGAVIVERVRELPFDEGYDAVANKFVNMFEAGIVDPAKVTRSALQNAASIGGMVLTTEGV 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L H++  +          +E +GA IV  AL AP   IA NA           K   +  GYNA   +Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHMAPALEEWAASNLSGEELIGANIVASALTAPLMRIAENAGVNGAVVAENVKSKSFNEGYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 75/142 (52.82%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA IV  AL AP   IA NA           K    + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPSLEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISEGYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 74/142 (52.11%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA IV+ +L AP   IA NA           K    + GYNA T  Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLAADLQKWANSNLSGEELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISDGYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROMP2.092e-3151.4160 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_PROM52.092e-3151.4160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROMT2.733e-3152.1160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_LACAC3.569e-3154.5560 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_DESAA3.569e-3150.7060 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH60_PHATR4.661e-3150.3560 kDa chaperonin, chloroplastic OS=Phaeodactylum ... [more]
CH603_ANAVT4.661e-3150.3560 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]
CH602_SYNS34.661e-3151.4160 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH601_SYNPX4.661e-3152.8260 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_PROM34.661e-3152.1160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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