CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25
Identity = 64/141 (45.39%), Postives = 87/141 (61.70%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE E++++K R+EDA +AT AA+EEGIVPGGG AL+     + ++     +AD+  G  IV +A+  P   I  N               +   GYNA T +Y +M++AGV+DP KVTR ALQNAASVAG++L T A
Sbjct:  381 VGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASLTGV--NADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDA 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_SHEDO (60 kDa chaperonin OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA +AT AA+EEG+VPGGG ALV ++  +  I  ++ + D++ G  I  +A+ AP   IA NA           K+     GYNA  D Y +ML+ G++DP KVTR ALQ AAS+AG+++ T+A+
Sbjct:  381 VGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASMIADI--EVLNEDQKHGVVIALRAMEAPLRQIATNAGQEASVVANTVKNGTGNYGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAM 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_SCAIO (60 kDa chaperonin OS=Scardovia inopinata GN=groL PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E ++RK RIEDA     AAIEEG++PGGG ALV  +  V   K+   + DE  GA IV +A+ AP   IA NA           +     +G NA T +YE++L AGV DP KVTR ALQNAAS+AG+ L T+A+
Sbjct:  379 VGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQAAADVQ--KNVKLEGDEATGAGIVFRAIEAPLKQIAQNAGFSGEVVIDKVRTLPAGSGLNAATGEYEDLLSAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_PSEPG (60 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 64/143 (44.76%), Postives = 93/143 (65.03%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TE E++++K R+EDA +AT AA+EEG+VPGGG ALV     + AI D K E+ D+ +G A++++A+ AP   I  NA           K      GYNA T +Y +M++ G++DPAKVTR ALQ AAS+ G+++ T+A+
Sbjct:  381 VGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRA---LAAIVDLKGENEDQNVGIALLRRAVEAPLRQITANAGDEPSVVADKVKQGSGNFGYNAATGEYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAM 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATETE++++K R+EDA +AT AA+EEGIVPGGG AL+     + AI+      ++  G  IV++A+  P   I+ NA           +    T G+NA  D+Y +M++AG+IDP KV R ALQNA+SVAG++L T+A
Sbjct:  381 VGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRC---IKAIESLDLPGEQNWGVNIVKRAMEEPLRQISANAGAEGSIVVNQVRGGADTYGFNAAADEYCDMIEAGIIDPTKVVRSALQNASSVAGLMLTTEA 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_PARDN (60 kDa chaperonin OS=Parascardovia denticolens GN=groL PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E ++RK RIEDA     AAIEEG++PGGG ALV  +    A K    D DE  GA IV +A+ AP   IA NA           +     +G NA T +YE++++AGV DP KVTR ALQNAAS+AG+ L T+A+
Sbjct:  379 VGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQAAGE--AEKSVKLDGDEATGADIVFRAIEAPLKQIAENAGLSGEVVIDKVRTLPAGSGLNAATGEYEDLMKAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE E+++RK R++DA NAT AA+EEGIVPGGG AL+  S ++  +   L D DE+ G  IV+KAL AP   IA NA            +++  + G+NA T++Y +++  GVIDP KV R ALQNAAS+A +++ T+A
Sbjct:  381 VGGATEVEVKERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVV--GLND-DEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEA 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 62/142 (43.66%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA +AT AA++EGIVPGGG A +     + A+    E   ++ G  ++++AL  P   IA NA           K+ +   GYNA  D+Y +M+QAG+IDP KV+R ALQNA+S+AG++L T+A+
Sbjct:  380 VGAATEVEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRAMSTLDALNLPTE---QQFGVNVIKRALEEPIRQIAQNAGVDGSIVVDKVKNGKDAFGYNAADDEYVDMIQAGIIDPTKVSRSALQNASSIAGLMLTTEAM 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            +G ATE E++++K R++DA +AT AA+EEGIVPGGG AL+     +  +     + DE+ G  I++ A+ +P   I +NA           K+     GYNA  D+YE M+ AG+IDP KVTR AL+NAASVA ++L T+ +
Sbjct:  380 IGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALIRAGAALDNVA--FHNEDEKTGIQIIRTAIESPLRAIVYNAGLEGSVIVQKVKEGTGDYGYNAREDRYEAMIAAGIIDPTKVTRLALENAASVASLLLTTECV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_BIFAA (60 kDa chaperonin OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=groL PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E ++RK RIEDA     AAIEEG++PGGG AL+  +    A  D   + DE  GAAIV +A+ AP   IA NA           +      G NA T++YE++L AGV DP KVTR ALQNAAS+AG+ L T+A+
Sbjct:  379 VGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALIQAA--AKAKDDVKLEGDEATGAAIVFRAVEAPIKQIAENAGLSGDVVIDKVRSLPDGQGLNAATNEYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BURP01.006e-2545.3960 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH60_SHEDO1.314e-2544.3760 kDa chaperonin OS=Shewanella denitrificans (str... [more]
CH60_SCAIO1.314e-2548.5960 kDa chaperonin OS=Scardovia inopinata GN=groL P... [more]
CH60_PSEPG1.314e-2544.7660 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH60_PELCD1.314e-2545.3960 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]
CH60_PARDN1.314e-2548.5960 kDa chaperonin OS=Parascardovia denticolens GN=... [more]
CH60_HYPNA1.314e-2547.1860 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_GEOSF1.314e-2543.6660 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH60_CYTH31.314e-2542.9660 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_BIFAA1.314e-2548.5960 kDa chaperonin OS=Bifidobacterium adolescentis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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