CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 65/142 (45.77%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXK-DSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE E+++RK R++DA +AT AA+EEGIVPGGG AL++ +  +  +K   +D  +  G  IV++A+ AP   IA NA             +++   G+NA TD YEN+  AGVIDP KV R ALQ+AASV+G+++ T+A
Sbjct:  381 VGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGANDDQTK--GIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVIDPTKVVRTALQDAASVSGLLITTEA 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_NITEC (60 kDa chaperonin OS=Nitrosomonas eutropha (strain C91) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA +AT AA+EEGIVPGGG AL+   D V   K    D D   G  IV +AL  P   I  N            K+ +   GYNA T +Y +++  GV+DP KVTR ALQNA+SVAG++L T A+
Sbjct:  381 VGAATEMEMKEKKARVEDAFHATRAAVEEGIVPGGGVALLRTIDAVSKAKGDNHDQDS--GIKIVLRALEEPLRQIVTNCGDEASVVVNKVKEGKGNFGYNAATGEYGDLVAMGVLDPTKVTRSALQNASSVAGLILTTDAM 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_MARMM (60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE E++++K R++DA NAT AA+EEGIVPGGG AL+  S  +  ++   ++AD+  G AIV +AL +P   IA N+            ++   T G+NA T++Y +ML  GVIDPAKV R ALQ+AASVA +++ T+A
Sbjct:  381 VGGATEIEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLKASAKLAGLEG--DNADQTQGIAIVARALQSPIRQIATNSGVEGSIVVGKVMENPSATFGFNAQTEEYGDMLAFGVIDPAKVVRTALQDAASVASLLITTEA 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_DELAS (60 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA +AT AA+EEGIV GGG AL+     V  +K    DA++  G  ++ KA+ AP   I  NA            +     G+NA  D Y +ML+ G++DP KVTR ALQNAASVA ++L T+A+
Sbjct:  381 VGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAVGDLKTG--DAEQDAGIKLIMKAIEAPLREIVANAGGEPSVVVNAVLNGSGNYGFNAANDTYGDMLEMGILDPTKVTRTALQNAASVASLLLTTEAM 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHRSD (60 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA ++T AA+EEG+VPGGG ALV + + +  +K   ++ D+  G AI  +A+ AP   I  NA           K  E   GYNA T +Y ++   GV+DPAKVTR ALQ+A SVAG+++ T+A+
Sbjct:  381 VGAATEFEMKEKKARVEDALHSTRAAVEEGVVPGGGTALVRILNKLVDLKG--DNEDQTHGIAIALRAMEAPLRQIVTNAGQEASVIVNQVKAGEGNYGYNAQTGEYGDLFDMGVLDPAKVTRSALQSAGSVAGLMITTEAM 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDS-EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATETE++++K R++DA +AT AA+EEGIV GGGAAL+     +          DE +GAAIV++AL AP   IA NA           ++S E  TG++A   +Y NML++G+IDP KV R AL NA SVA M+L T+A
Sbjct:  380 VGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKSKISLNL----QGDEAIGAAIVERALRAPLRQIAENAGFDAGVVVNTVENSKEENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEA 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNA-XXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATETE++++K R++DA +AT AA+EEGIV GGGAAL+   +   A+K+ L+  DE++GA IV++AL AP   IA NA             + E   G++A   ++ NM +AG+IDP KV R ALQNA SVA ++L T+A
Sbjct:  380 VGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAGN---AVKENLK-GDEKIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEA 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 66/143 (46.15%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R+EDA NAT AA++EGIVPGGG AL+     V  I +  ++AD + G  IV KAL AP   IA NA            +++  T G++A T++Y +ML  G++DPAKV R ALQ+AASVA +++ T+A+
Sbjct:  381 VGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVAALLVTTEAM 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKD-SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E+++RK R++DA +AT AA+EEGIVPGGG AL+  S+ +  +K K  + D++ G  IV+KAL  PA  IA NA            +  ++  G+++ + +Y N++  G+IDP KV R A+QNAASVA +++ T+A+
Sbjct:  381 VGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTK--NDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYNYGFDSQSGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAM 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_THEFY (60 kDa chaperonin 1 OS=Thermobifida fusca (strain YX) GN=groL1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 70/142 (49.30%), Postives = 90/142 (63.38%), Query Frame = -3
Query:  209 GXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE-DADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 631
            G ATE EL++RK RIEDA     AA+EEGI+PGGG AL+  S    A  +KLE + DE +GA+IV++A+  P   IA NA           K  E   G NA T +Y ++ + GVIDP KVTR ALQNAAS+AG+ L T+A+
Sbjct:  381 GAATEVELKERKHRIEDAVRNAKAAVEEGILPGGGVALLQASI---AAFEKLELEGDEAIGASIVRRAVEEPLKQIAINAGYEGGVVVEKVKSLEPGIGLNAATGEYTDLFKDGVIDPTKVTRSALQNAASIAGLFLTTEAV 519          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NOVAD3.822e-2545.7760 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_NITEC3.822e-2546.4860 kDa chaperonin OS=Nitrosomonas eutropha (strain... [more]
CH60_MARMM3.822e-2546.4860 kDa chaperonin OS=Maricaulis maris (strain MCS1... [more]
CH60_DELAS3.822e-2544.3760 kDa chaperonin OS=Delftia acidovorans (strain D... [more]
CH60_CHRSD3.822e-2544.3760 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH60_CAMLR3.822e-2547.8960 kDa chaperonin OS=Campylobacter lari (strain RM... [more]
CH60_CAMHC3.822e-2547.1860 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH602_RHOPS3.822e-2546.1560 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_RHOP53.822e-2543.3660 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_THEFY3.822e-2549.3060 kDa chaperonin 1 OS=Thermobifida fusca (strain ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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