CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSE-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIKD LE+ ++++GA IV++AL  P  LIA NA             ++ +  GYNA T +YE+++ AG+IDP KV RC L++AASVA   L +  +
Sbjct:  334 VGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVV 476          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_LACJO (60 kDa chaperonin OS=Lactobacillus johnsonii GN=groL PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPA-IKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +   +K   EDA+   G  IV KAL AP   IA NA           +  +   GYNA T+K+ENM++AG+IDP KVTR ALQNAAS+A ++L T+A+
Sbjct:  379 VGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQGTVKGDSEDAET--GVKIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEVGYNAATNKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_LACGA (60 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groL PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 74/142 (52.11%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RK RIEDA NAT AA+EEG V GGG ALV +   +     K +  D + G  IV KAL AP   IA NA           +  +   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++L T+A+
Sbjct:  379 VGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVMKSIQG-NVKGDSQDAQTGVNIVMKALGAPVRQIAENAGKDGAVILDHLEHEDPEIGYNAATDKWENMVKAGIIDPTKVTRSALQNAASIAALLLTTEAV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DER+GA IV KAL AP   IA NA                  GY+A+ D Y +M++AG++DPAKVTR AL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDERIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMIEAGILDPAKVTRSALESAASVAGLLLTTEAL 522          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 73/142 (51.41%), Postives = 90/142 (63.38%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA IV  AL AP   IA NA           K      G+NA + +Y +ML AG++DPAKVTR  LQNAAS+AGMVL T+ I
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASSLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAEGFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 75/142 (52.82%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG A+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G  IV KAL AP   IA NA           K++E   G+NA TD++ NML+AG++DP KVTR ALQ+AASVA M L T+A+
Sbjct:  379 VGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATDEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++++KLRIEDA N+T AA+EEGIV GGG AL+   D +P++++   D DE  G +IV++AL  P   +AHN+           K      G+NA+ + Y NML AGV+DP KVTR AL+NA S+A M L T+A+
Sbjct:  379 VGAATETEMKEKKLRIEDALNSTRAAVEEGIVAGGGTALI---DVLPSLEEVQADGDESTGVSIVRRALEEPVRQLAHNSGAEGSIVAEQVKQKGTNIGFNALENDYTNMLDAGVVDPKKVTRSALENAGSIAAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++++KLRIEDA NAT AA+EEGIV GGG   +H+   +  + +K    DER G AIV+KAL  P   IA NA           K      G+NA+T++Y +M+ AG++DPAKVTR ALQNAASVA M+L T+A+
Sbjct:  380 VGAATETEMKEKKLRIEDALNATRAAVEEGIVAGGGTTYIHIIKALEEL-EKTATGDERTGIAIVRKALEEPLKQIAINAGLEGSVIVEKVKTLPVGHGFNALTEEYVDMIAAGIVDPAKVTRSALQNAASVAAMLLTTEAL 520          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_BACP2 (60 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 73/142 (51.41%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V +I+    D D + G  IV ++L  P   IAHNA           K+ E   G+NA T+++ NM++ G++DP KVTR ALQNAASVA M+L T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYKKVASIE---ADGDVQTGVNIVLRSLEEPIRQIAHNAGLEGSVIVERLKNEEIGVGFNAATNEWVNMIEKGIVDPTKVTRSALQNAASVAAMLLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++++K R+EDA NAT AA+EEGIVPGGG A +     + A+K    + DE++G  IV+KAL  P  +IA NA           K+     G+NA T+ YE+M++AGVIDP KVTR ALQNAASVA ++L TQ +
Sbjct:  381 VGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVAYIRTLPILEALK---LEGDEQVGVNIVRKALEEPLKMIAANAGMEGTIVVEKVKEQSGAFGFNARTEVYEDMIEAGVIDPTKVTRFALQNAASVASLMLTTQCM 519          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_SECCE5.153e-3048.95RuBisCO large subunit-binding protein subunit beta... [more]
CH60_LACJO5.153e-3052.4560 kDa chaperonin OS=Lactobacillus johnsonii GN=gr... [more]
CH60_LACGA5.153e-3052.1160 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH60_CHLMU5.153e-3047.8960 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]
CH602_SYNSC5.153e-3051.4160 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH60_STAAB6.731e-3052.8260 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_NATTJ6.731e-3048.5960 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH60_CARHZ6.731e-3051.4160 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_BACP26.731e-3051.4160 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH602_SYNAS6.731e-3050.7060 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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