CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_LACDB (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++R+ R+EDA NAT AA++EG V GGG ALV++ + V A K   +  DE+ G  IV +AL AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++L T+A+
Sbjct:  379 VGAATETELKERRYRVEDALNATRAAVDEGYVAGGGTALVNVEEAVKATKGDTD--DEQTGINIVARALTAPVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_LACDA (60 kDa chaperonin OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++R+ R+EDA NAT AA++EG V GGG ALV++ + V A K   +  DE+ G  IV +AL AP   IA NA           +  +   GYNA  DKY NM+  G+IDP +VTR ALQNAAS+AG++L T+A+
Sbjct:  379 VGAATETELKERRYRVEDALNATRAAVDEGYVAGGGTALVNVEEAVKATKGDTD--DEQTGINIVARALTAPVRQIAENAGQEGSVVVDHLRKVDPEVGYNAAEDKYVNMIDEGIIDPTQVTRSALQNAASIAGLLLTTEAV 518
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CYACA (60 kDa chaperonin, chloroplastic OS=Cyanidium caldarium GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 70/142 (49.30%), Postives = 96/142 (67.61%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++++KLR+ED+ NAT AAIEEGIVPGGG ALVH+S ++         +DE LGA IV++A +AP   IA N+           +   +  GY+A+++   +M  AG+IDPAKVTR A+QNAAS+A MVL T+ +
Sbjct:  380 VGAATETEMKEKKLRLEDSINATKAAIEEGIVPGGGTALVHISANLKQWAKINLSSDELLGANIVEQASLAPLHKIAENSGKNGSLIVEALEHKNFEIGYDALSNSLVDMYDAGIIDPAKVTRSAIQNAASIASMVLTTECV 521
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++++KLRIEDA  AT AA+EEGIV GGG ALV++   V  + D +   DE+ G  I+ +AL  P   IA NA           K SE   G++A  +KY NM++AG++DPAKVTR ALQNAASVA MVL T+++
Sbjct:  379 VGAATETEMKEKKLRIEDALAATKAAVEEGIVAGGGTALVNVIPKVAKVLDTVS-GDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVDPAKVTRSALQNAASVASMVLTTESV 519
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLTR (60 kDa chaperonin OS=Chlamydia trachomatis GN=groL PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +ML+AG++DPAKVTR AL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEAL 522
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLTB (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +ML+AG++DPAKVTR AL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEAL 522
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLTA (60 kDa chaperonin OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=groL PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +ML+AG++DPAKVTR AL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEAL 522
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLT2 (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG AL+     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +ML+AG++DPAKVTR AL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEAL 522
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATE E++++K R++DA++AT AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA                  GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++L T+A+
Sbjct:  381 VGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEAL 522
[Close]
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + D + G  IV +AL  P   IAHNA           K+ E   G+NA T ++ NM++ G++DP KVTR ALQNAASVA M L T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAAVE---AEGDAQTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEEIGVGFNAATGEWVNMIEKGIVDPTKVTRSALQNAASVAAMFLTTEAV 517
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACDB8.790e-3050.0060 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_LACDA8.790e-3050.0060 kDa chaperonin OS=Lactobacillus delbrueckii sub... [more]
CH60_CYACA8.790e-3049.3060 kDa chaperonin, chloroplastic OS=Cyanidium cald... [more]
CH60_CLOTH8.790e-3051.4160 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH60_CHLTR8.790e-3047.8960 kDa chaperonin OS=Chlamydia trachomatis GN=groL... [more]
CH60_CHLTB8.790e-3047.8960 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLTA8.790e-3047.8960 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLT28.790e-3047.8960 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLFF8.790e-3047.8960 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH60_BACSU8.790e-3051.4160 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
back to top