CB304834

Overview
NameCB304834
Unique NameCB304834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:517..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 74/142 (52.11%), Postives = 92/142 (64.79%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE+++RKLRIEDA N+T AA+EEGIV GGG ALV++   + A+K      DE  G  IV +AL  P   IAHNA           K  E   GYNA T +Y NM++ G++DP KVTR ALQNAASV+ M L T+A+
Sbjct:  379 VGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNV---IKAVKAVDATGDEATGVNIVLRALEEPVRQIAHNAGLEGSIIVEKLKAEEVGVGYNAATGEYVNMVETGILDPVKVTRSALQNAASVSAMFLTTEAV 517          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = -3
Query:  236 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDS--EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVA 634
            VG  TETEL+++KLR+EDA NAT AA+EEG+VPGGG  L+ LS+ V  IK ++ D ++++GA I+++AL  P  LIA NA             +      GYNA TD +EN+++ G+IDP+KV RC+++NA SVA
Sbjct:  265 VGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVA 399          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED--ADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL++RKLRIEDA NAT AA+EEGIV GGG +L+++   +PA++  L +  ADE  G  +V +AL AP   IA NA           K+     GYNA T +Y +M+  G++DPAKVTR ALQNAASV+ M L T+A+
Sbjct:  379 VGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTSLINV---IPAVRALLSEVTADEATGVKLVLRALEAPVRQIAENAGEEGSVIVEKLKNESVGVGYNAATGEYVDMIAHGIVDPAKVTRSALQNAASVSAMFLTTEAV 519          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CLODI (60 kDa chaperonin OS=Clostridium difficile GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE EL++RKLRIEDA NAT AA+EEGIV GGG A V +   +PAI   +E  + + +LGA IV+KAL  P   IA NA            +SE  TG++A+ +KY NM++AG++DP KV+R ALQNAAS+A   L T+A
Sbjct:  379 VGAATEVELKERKLRIEDALNATRAAVEEGIVAGGGTAFVSV---IPAIGTLIESLEGEVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEA 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_CLOD6 (60 kDa chaperonin OS=Clostridium difficile (strain 630) GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  212 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQA 634
            VG ATE EL++RKLRIEDA NAT AA+EEGIV GGG A V +   +PAI   +E  + + +LGA IV+KAL  P   IA NA            +SE  TG++A+ +KY NM++AG++DP KV+R ALQNAAS+A   L T+A
Sbjct:  379 VGAATEVELKERKLRIEDALNATRAAVEEGIVAGGGTAFVSV---IPAIGTLIESLEGEVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEA 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH603_ACAM1 (60 kDa chaperonin 3 OS=Acaryochloris marina (strain MBIC 11017) GN=groL3 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 70/142 (49.30%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++DRKL++EDA NAT AA+EEGIVPGGG  LVHL+  +     +    DE +GA I+ ++L AP   I  NA           K   + TGY+A+ ++Y +M  AG++DPAKVT   L+NAAS+AGMVL T+ I
Sbjct:  380 VGAATETEMKDRKLKLEDAINATQAAVEEGIVPGGGTTLVHLAPQLEDWSAEHLVGDELIGAMILVRSLSAPLRQIVENAGLNGGVVVEQVKTLPFNTGYDALNNQYVDMFTAGIVDPAKVTSAGLRNAASIAGMVLTTECI 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETEL+++K R+EDA  AT AA+EEGIVPGGGA LVH    +PA++    + DE +G  IV++AL  P   IA NA           +  +   G++A+ ++Y +M++AG++DPAKVTR ALQNAAS+A M+L T+AI
Sbjct:  380 VGAATETELKEKKHRVEDALAATRAAVEEGIVPGGGATLVHA---IPAVEKIQAEGDEAVGVRIVRRALEEPLRQIAANAGLEGSVIVERVRSEQPGIGFDAVKEEYVDMIKAGIVDPAKVTRSALQNAASIASMLLTTEAI 518          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG  TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ L+  V AIKD L + +E++GA IV++AL  P  LIA NA             S+    GYNA T KYE+++ AG+IDP KV RC L++A+SVA   L +  +
Sbjct:  429 VGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCV 571          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_PORPU (60 kDa chaperonin, chloroplastic OS=Porphyra purpurea GN=groL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 74/142 (52.11%), Postives = 90/142 (63.38%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AAIEEGIVPGGG+  VH+S  +          DE +GA IVQ+AL  P   IA NA           K +++  GY+A   K  NM  AG+IDPAKV R ALQNA S+A MVL T+ I
Sbjct:  380 VGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGSTNVHISGELFVWAKNNLFEDELIGALIVQRALTYPLRRIAFNAGDNGAVVVEKVKTNDFCIGYDASNGKIVNMYDAGIIDPAKVARSALQNATSIAAMVLTTECI 521          
BLAST of CB304834 vs. ExPASy Swiss-Prot
Match: CH60_GUITH (60 kDa chaperonin, chloroplastic OS=Guillardia theta GN=groL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  209 VGXATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLED---ADERLGAAIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLPTQAI 634
            VG ATETE++D+KLR+EDA NAT AA+EEGIVPGGG+ L HL++    +KD  ED    DE +GA IV+++L +P   I  N            K+SE+  GY+A   +  +M   G+IDPAKVTR  LQNAAS+A M+L T+ I
Sbjct:  380 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGSTLTHLAND---LKDWAEDNLIEDELIGALIVERSLTSPLRRIIENTGQNSAIIIEQIKESEFNIGYDAAKGEIVDMYDVGIIDPAKVTRSGLQNAASIASMILTTECI 521          
The following BLAST results are available for this feature:
BLAST of CB304834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACSK8.790e-3052.1160 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
RUBB_CHLRE1.148e-2948.15RuBisCO large subunit-binding protein subunit beta... [more]
CH60_EXISA1.148e-2951.3960 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_CLODI1.148e-2951.7560 kDa chaperonin OS=Clostridium difficile GN=groL... [more]
CH60_CLOD61.148e-2951.7560 kDa chaperonin OS=Clostridium difficile (strain... [more]
CH603_ACAM11.148e-2949.3060 kDa chaperonin 3 OS=Acaryochloris marina (strai... [more]
CH601_MOOTA1.148e-2949.3060 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]
RUBB_PEA1.499e-2949.65RuBisCO large subunit-binding protein subunit beta... [more]
CH60_PORPU1.499e-2952.1160 kDa chaperonin, chloroplastic OS=Porphyra purpu... [more]
CH60_GUITH1.499e-2949.6660 kDa chaperonin, chloroplastic OS=Guillardia the... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304834 ID=CB304834; Name=CB304834; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAGACACGATTTTA
TATCAATTAAGTAAAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACT
CTTTCATCTATAAAACTCCTAACTAAATCTGGAGAGTCCTAAAGATTACA
CCATAAGACCTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTC
TCCACGACAATAGCCTGAGTGGGCAGGACCATTCCTGCAACTGAAGCCGC
ATTCTGCAATGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCT
GAAGCATGTTCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCAT
TCACTATCTTTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATT
GTGAGCTATCAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGGCAG
CACCTAATCGCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACA
TGATCAGACAGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTC
CTCTATGGCTGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTAC
GGTCCTCAAGCTCAGTTTCTGTGGCANNNCCAACTC
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