CB304835
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -2 Query: 423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650 ATD+ +RG+D KGV VINY+ P S Y+HR+GRT RAGRSG A T+ E D ++ K+ G ++ S ++ Sbjct: 607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVI 682
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2 Query: 396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650 ATDV ARG+D + ++ V+NYD P +Y+HRIGRTGRAGR+G A+ + LRNI MK + +P L +L GK+ Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2 Query: 396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650 ATDV ARG+D + ++ V+NYD P +Y+HRIGRTGRAGR+G A+ + LRNI MK + +P L +L GK+ Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2 Query: 396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650 ATDV ARG+D + ++ V+NYD P +Y+HRIGRTGRAGR+G A+ + LRNI MK + +P L +L GK+ Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2 Query: 396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650 ATDV ARG+D + ++ V+NYD P +Y+HRIGRTGRAGR+G A+ + LRNI MK + +P L +L GK+ Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -2 Query: 378 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRE 650 AT + +RG+D K +N V+N+D PD Y+HR+GRTGRAG G A T T D+ F +I ++ SG +VP L KL + R+E Sbjct: 812 ATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPD---ELRKLNDTYEKKRKE 899
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = -2 Query: 384 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPR 650 ATDV ARG+D K + VINYDFP Y+HRIGRTGRAG SG A T +++ D ++ +++ + VP+ + + G R R Sbjct: 445 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGGMGRAR 533
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = -2 Query: 405 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLK 650 ATDV ARG+D V+ V+NY P YIHRIGRTGRAG+SG +++ + D L N+ + + +P W+L P ++ Sbjct: 488 ATDVAARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGTKRLPDWLLRHPAVQ 569
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12 Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = -2 Query: 417 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL 650 AT V+ARG+D K + V+NYD P+ Y+HR+GRTGRAG +G A+T T + + +IA +K S VP + TL Sbjct: 724 ATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -2 Query: 423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650 ATD+ +RG+D KGV VINY+ P S Y+HR+GRT RAGRSG A T+ + D ++ KA G ++ S ++ Sbjct: 607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVRAGKAQGAKIASRVV 682 The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 351
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bpback to top |