CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  E D   ++      K+ G ++ S ++
Sbjct:  607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVI 682          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650
            ATDV ARG+D + ++ V+NYD P    +Y+HRIGRTGRAGR+G A+      +   LRNI   MK +   +P   L   +L GK+
Sbjct:  301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650
            ATDV ARG+D + ++ V+NYD P    +Y+HRIGRTGRAGR+G A+      +   LRNI   MK +   +P   L   +L GK+
Sbjct:  301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650
            ATDV ARG+D + ++ V+NYD P    +Y+HRIGRTGRAGR+G A+      +   LRNI   MK +   +P   L   +L GK+
Sbjct:  301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  396 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKK 650
            ATDV ARG+D + ++ V+NYD P    +Y+HRIGRTGRAGR+G A+      +   LRNI   MK +   +P   L   +L GK+
Sbjct:  301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT---IPEVELPNAELLGKR 382          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  378 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRE 650
            AT + +RG+D K +N V+N+D PD    Y+HR+GRTGRAG  G A T  T D+  F  +I   ++ SG +VP     L KL     + R+E
Sbjct:  812 ATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPD---ELRKLNDTYEKKRKE 899          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = -2
Query:  384 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPR 650
            ATDV ARG+D K +  VINYDFP     Y+HRIGRTGRAG SG A T +++ D     ++  +++ +   VP+ +  +    G   R R
Sbjct:  445 ATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGGMGRAR 533          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: PRP28_PICGU (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia guilliermondii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  405 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLK 650
            ATDV ARG+D   V+ V+NY  P     YIHRIGRTGRAG+SG +++   + D   L N+ + +      +P W+L  P ++
Sbjct:  488 ATDVAARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGTKRLPDWLLRHPAVQ 569          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  417 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTL 650
            AT V+ARG+D K +  V+NYD P+    Y+HR+GRTGRAG +G A+T  T +   +  +IA  +K S   VP  + TL
Sbjct:  724 ATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  423 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWIL 650
            ATD+ +RG+D KGV  VINY+ P S   Y+HR+GRT RAGRSG A T+  + D   ++      KA G ++ S ++
Sbjct:  607 ATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVRAGKAQGAKIASRVV 682          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
DRS1_ASPNC1.340e-1244.74ATP-dependent RNA helicase drs1 OS=Aspergillus nig... [more]
DEAD_SHIFL1.340e-1244.71Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI1.340e-1244.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL61.340e-1244.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO571.340e-1244.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DDX46_DICDI1.340e-1241.76ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
DB10_NICSY1.340e-1241.57ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
PRP28_PICGU1.750e-1241.46Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP11_SCHPO1.750e-1244.87Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_ASPCL1.750e-1244.74ATP-dependent RNA helicase drs1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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