CB304836

Overview
NameCB304836
Unique NameCB304836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:374..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 66/152 (43.42%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPPLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 661
            GE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EP LQIG+ P     S VTA      +M  WLP
Sbjct:  116 GEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPPLQIGYQPA--DPISVVTAGPSLNNYMQGWL 661
            GE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +                        L  S           QP GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:  113 GEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 51/146 (34.93%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  242 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGY------QPADPISVVTAGPSLNNYMQGW 661
            GE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      ++     + + +   T+         G  +  AQP  D     ++CEP LQIGY      + A+P S    G   NN++ GW
Sbjct:  114 GEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDSFFHALECEPPLQI----GYQPADPISVVTAGPSLNNYMQGWL 661
            GEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++   L  +  A  Q   G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  114 GEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  305 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ 661
            GE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P L IGYQ
Sbjct:  115 GEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  305 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ 661
            GE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P L IGYQ
Sbjct:  115 GEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 661
            GE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +      T  + A       +G  V              G    QP   S   A++ EP LQIGY     PA+  ++        + NN+M GW+
Sbjct:  112 GEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2
Query:  488 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 661
            GE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:  111 GEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2
Query:  488 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 661
            GE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:  111 GEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
The following BLAST results are available for this feature:
BLAST of CB304836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MADS8_ORYSJ1.282e-1843.42MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.567e-1638.62MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MAD17_ORYSJ8.597e-1534.93MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL3_ARATH6.161e-1333.33Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS5_ORYSJ1.051e-1238.66MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.051e-1238.66MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS6_ORYSJ6.812e-1233.55MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS1_ORYSJ7.531e-1155.17MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI7.531e-1155.17MADS-box transcription factor 1 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304836 ID=CB304836; Name=CB304836; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTTTTTTTNNNTTTTTTTTTCGAAAATACACGCACACACA
ACATAGCTATATATCGTCATCAGTTTCCCTAAAGGGCAGGATCACTGTAG
AGTTATTATAATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGG
GTTGCTTACAAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTACAA
TACATTGACTGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTG
CATGTAATTATTCAAACTCGGGCCTGCTGTGACAACCGATATTGGGTCCG
CAGGCTGGTATCCAATTTGCAATGGGGGTTCACATTCCAAGGCGTGAAAG
AAGCTATCGCCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTC
TGCACTAGGATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACT
GCAAACCAGCAAAAGCGGCGTGCCTTAGCGTCATCGTCCTTTGTTTGAGG
GTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAG
GGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGACA
TATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGCCA
AGTTCTTCTCCA
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