CB304836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18 Identity = 66/152 (43.42%), Postives = 84/152 (55.26%), Query Frame = -2 Query: 236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPPLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 661 GE+LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++ L E Q++ A GY ++ P G+ FFH+LE EP LQIG+ P S VTA +M WLP Sbjct: 116 GEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16 Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = -2 Query: 239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFH--ALECEPPLQIGYQPA--DPISVVTAGPSLNNYMQGWL 661 GE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK + L S QP GD FF L C LQIGY A D ++ T+ +++ + QGW+ Sbjct: 113 GEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK------------------------LEESCASFRPNWDVRQP-GDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15 Identity = 51/146 (34.93%), Postives = 77/146 (52.74%), Query Frame = -2 Query: 242 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGY------QPADPISVVTAGPSLNNYMQGW 661 GE+LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK LK + ++ + + + T+ G + AQP D ++CEP LQIGY + A+P S G NN++ GW Sbjct: 114 GEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13 Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = -2 Query: 239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP--QGDSFFHALECEPPLQI----GYQPADPISVVTAGPSLNNYMQGWL 661 GEEL ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++ L + A Q G Q + G + P Q FF L+ LQ+ + PA+ + T ++N + GW+ Sbjct: 114 GEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK---LEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2 Query: 305 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ 661 GE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P L IGYQ Sbjct: 115 GEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2 Query: 305 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ 661 GE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK++ +Q G + L+ S +D G ++ + HA+ C+P L IGYQ Sbjct: 115 GEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12 Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = -2 Query: 239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 661 GE+LGPL+ KEL+ LE+QL+ +L Q R +TQ M++ + EL+ KE+ L E N+ LK + T + A +G V G QP S A++ EP LQIGY PA+ ++ + NN+M GW+ Sbjct: 112 GEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2 Query: 488 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 661 GE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++ Sbjct: 111 GEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2 Query: 488 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 661 GE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++ Sbjct: 111 GEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168 The following BLAST results are available for this feature:
BLAST of CB304836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304836 ID=CB304836; Name=CB304836; organism=Citrus sinensis; type=EST; length=662bpback to top |