CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_BACST (Chaperone protein dnaJ OS=Bacillus stearothermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = -2
Query:  109 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPFEL 381
            A  DYY  L V +NAT +EIK  YRKL+ KYHPD+NK P A EKFKEI  AYEVLSDD+KR  YD+FG+A     + G  +     D F+L
Sbjct:    2 AKRDYYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGQADPNQGFGGFRS-----DDFDL 87          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP6 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY  L V ++A   EIK  YR+LA KYHPD+NK PGAE+KFKEI+ AYEVLS+ E R  YD+FGEAG++G
Sbjct:    4 DYYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPETRARYDQFGEAGVSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  127 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 378
            G DYY TL + + A+ +EIK  YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G   G S  S G
Sbjct:    2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG--SGPSGGSSG 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  148 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 381
            A  DYY  L V +NAT +EIK  YRKL+ KYHPDINK P A EKFKEI  AYEVLSDD+KR  YD+FG A     + G
Sbjct:    2 AKRDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADPNQGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP8 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 8801) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY TL V +NA+ ++IK  YR+LA KYHPDINK  GAE++FKEI+ AYEVLS+ E R  YD+FGEAG++G
Sbjct:    4 DYYETLGVDRNASKEDIKRAYRRLARKYHPDINKEAGAEDRFKEINRAYEVLSEPETRARYDQFGEAGVSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  112 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG----EYDGLSNTSQGVDPFE 372
            DYY  L V +NA+ +++K  YR+LA KYHPD+NK PGAEE+FKEI+ AYEVLS+ + R  YD+FGEAG++G     Y  + +     D FE
Sbjct:    4 DYYDILGVDRNASKEDLKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPDTRSRYDQFGEAGVSGAGGFNYGDMGDMGGFADIFE 94          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  148 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 381
            A  DYY  L V +NAT +EIK  YRKL+ KYHPDINK P A EKFKEI  AYEVLSDD+KR  YD+FG A     + G
Sbjct:    2 AKRDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADPNQGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLS (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T+YY  L V +NA+  EIK  YRK++ KYHPD+NK  GAE+K+KE+  AYE LSD++KR  YD++GEAG  G + G
Sbjct:    4 TEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLM (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T+YY  L V +NA+  EIK  YRK++ KYHPD+NK  GAE+K+KE+  AYE LSD++KR  YD++GEAG  G + G
Sbjct:    4 TEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLC (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T+YY  L V +NA+  EIK  YRK++ KYHPD+NK  GAE+K+KE+  AYE LSD++KR  YD++GEAG  G + G
Sbjct:    4 TEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGRNGGFGG 79          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_BACST1.347e-1954.95Chaperone protein dnaJ OS=Bacillus stearothermophi... [more]
DNAJ_SYNP61.760e-1963.38Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNJB1_BOVIN2.298e-1955.95DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DNAJ_GEOSW2.298e-1961.54Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_CYAP82.298e-1963.38Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_CYAA52.298e-1951.65Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ_BACTR2.298e-1961.54Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
DNAJ_LACLS3.001e-1955.26Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_LACLM3.001e-1955.26Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_LACLC3.001e-1955.26Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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