CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAVT (Chaperone protein dnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = -2
Query:  133 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTS 372
            DYY  L V ++A  +EIK  YR+LA KYHPD+NK PGAEE+FKEI+ AYEVLS+ E R  YDRFG  G++G   G  + S
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDRFGPEGVSGAGVGFQDMS 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ANASP (Chaperone protein dnaJ OS=Anabaena sp. (strain PCC 7120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = -2
Query:  133 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTS 372
            DYY  L V ++A  +EIK  YR+LA KYHPD+NK PGAEE+FKEI+ AYEVLS+ E R  YDRFG  G++G   G  + S
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDRFGPEGVSGAGVGFQDMS 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 3.920e-19
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = -2
Query:  160 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 378
            G DYY TL + + A+ +EIK  YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G
Sbjct:    2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_TRIEI (Chaperone protein dnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY  L V ++A  +E+K  YR+LA KYHPD+NK PG+EE+FKEI+ AYE+LSD E +  +DRFGEAG++G
Sbjct:    4 DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKARFDRFGEAGVSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STACT (Chaperone protein dnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  148 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 381
            A  DYY  L V ++A+  EIK  YRKL+ KYHPDIN+  GAEEKFKEIS AYEVLSD+ KR  YD+FG  G  G + G
Sbjct:    2 AKRDYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACJO (Chaperone protein dnaJ OS=Lactobacillus johnsonii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  157 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGE 381
            A  DYY  L V +NA+  EI   YRKLA KYHPD+N  PGAEEK+KE++ AYEVL D +KR  YD+FG+AG+ G+
Sbjct:    2 AQRDYYDVLGVDKNASESEISKAYRKLAKKYHPDLNHEPGAEEKYKEVNEAYEVLHDKQKRAQYDQFGQAGVNGQ 76          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  148 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 372
            DYY  L V ++A  +++K  YR+LA KYHPD+NK  GAEE+FKEI+ AYEVLSD E R  YDRFGEAG++G   G
Sbjct:    4 DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRARYDRFGEAGVSGAAAG 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = -2
Query:  160 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 378
            G DYY TL + + A+  EIK  YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR ++DR+GE G+ G
Sbjct:    2 GKDYYQTLGLARGASDDEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L + ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSDD KR  YD+FG  G  G
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L + ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSDD KR  YD+FG  G  G
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQG 75          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ANAVT3.001e-1957.50Chaperone protein dnaJ OS=Anabaena variabilis (str... [more]
DNAJ_ANASP3.001e-1957.50Chaperone protein dnaJ OS=Anabaena sp. (strain PCC... [more]
DNJB1_HUMAN3.920e-1958.90DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]
DNAJ_TRIEI5.120e-1959.15Chaperone protein dnaJ OS=Trichodesmium erythraeum... [more]
DNAJ_STACT5.120e-1960.26Chaperone protein dnaJ OS=Staphylococcus carnosus ... [more]
DNAJ_LACJO5.120e-1958.67Chaperone protein dnaJ OS=Lactobacillus johnsonii ... [more]
DNAJ_CYAP45.120e-1960.00Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNJB1_MOUSE6.686e-1958.90DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
DNAJ_STAAW6.686e-1962.16Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT6.686e-1962.16Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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