CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  154 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 381
            A  DYY  L V ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSD+ KR  YD+FG  G  G +
Sbjct:    2 AKRDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQFGHDGPQGGF 77          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LYSSC (Chaperone protein dnaJ OS=Lysinibacillus sphaericus (strain C3-41) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = -2
Query:  148 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFG----EAGMTGEYDG 372
            DYY  L + ++AT  EIK  YRKL+ +YHPD+NK PGA+EKFKEI+ AYEVLSDD+K+  YD+FG     AG  G + G
Sbjct:    5 DYYEVLGLTKSATKDEIKKAYRKLSKQYHPDLNKEPGADEKFKEIAEAYEVLSDDQKKARYDQFGHEDPNAGFGGGFGG 83          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  148 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 378
            G DYY  L + + A+ ++IK  YRK A K+HPD NKSP AEEKFKE++ AYEVLSD +KR +YD+FGE G+ G   G
Sbjct:    2 GKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGG 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  148 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 378
            G DYY  L + + A+ ++IK  YRK A K+HPD NKSP AEEKFKE++ AYEVLSD +KR +YD+FGE G+ G   G
Sbjct:    2 GKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGGAGG 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  154 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 381
            A  DYY  L V ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSD+ KR  YD+FG  G  G +
Sbjct:    2 AKRDYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGF 77          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMA (Chaperone protein dnaJ OS=Prochlorococcus marinus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            D+Y TL V +NA    +K  YR+LA +YHPDINK  GAEE+FKEI  AYEVL D EKR  YD+FGEAG+ G
Sbjct:    3 DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRARYDQFGEAGLGG 73          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  100 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGM--TGEYDGLSNTSQGVDPFELYSA 372
            DYY  L V ++AT Q+IK  +RKLA KYHPD NK   AEEKFKE++ AYEVLSD+EKR +YD +G  G+  +G + G      G +P++++++
Sbjct:    6 DYYEILEVSRSATQQDIKKAFRKLAMKYHPDRNKDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHEGLNASGFHQG------GFNPYDVFNS 92          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L V ++A+ ++IK  YR+LA KYHPD+N  PGAEEKFK+I+ AYE LSD +KR  YD+FG AG  G
Sbjct:    2 AEQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQFGSAGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L V ++A+ ++IK  YR+LA KYHPD+N  PGAEEKFK+I+ AYE LSD +KR  YD+FG AG  G
Sbjct:    2 AEQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQFGSAGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACGA (Chaperone protein dnaJ OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  157 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGE 381
            A  DYY  L V +NA+  +I   YRKLA KYHPD+N  PGAEEK+KE++ AYEVL D +K+  YD+FG+AG+ G+
Sbjct:    2 AQRDYYDVLGVDKNASESDINKAYRKLAKKYHPDLNHEPGAEEKYKEVNEAYEVLHDKQKKAQYDQFGQAGVNGQ 76          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STAEQ1.945e-1860.53Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_LYSSC1.945e-1856.96Chaperone protein dnaJ OS=Lysinibacillus sphaericu... [more]
DNJB4_PONAB2.541e-1857.14DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_HUMAN2.541e-1857.14DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNAJ_STAES2.541e-1860.53Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_PROMA2.541e-1861.97Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_MYCGA2.541e-1849.46Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNAJ_LACRJ2.541e-1858.11Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACRD2.541e-1858.11Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACGA2.541e-1856.00Chaperone protein dnaJ OS=Lactobacillus gasseri (s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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