CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAU (Chaperone protein dnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  160 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 381
            A  DYY  L + ++A+  EIK  YRKL+ KYHPDINK  GA+EKFKEIS AYEVLSDD KR   D+FG  G  G
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRATIDQFGHDGPQG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  178 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFG 384
            AA  DYY+ L V +NAT +EIK  Y++LA +YHPD+NKSP AEEKFKEI+ AY VLSD EKR +YD +G
Sbjct:    2 AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEEKFKEINEAYAVLSDPEKRRIYDTYG 70          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLPM (Chaperone protein dnaJ OS=Wolbachia pipientis wMel GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  115 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPG---AEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 372
            DYY  L V +NA++ EIK  Y+KLA +YHPD N  PG   AEEKFKE++ AYEVLSD EKR  YDR+G  G +G + G S+     D F
Sbjct:    5 DYYDLLEVGRNASIDEIKKAYKKLALRYHPDRN--PGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIF 91          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_PEDPA (Chaperone protein dnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  127 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG 384
            AA  DYY  L V ++A+  EIK  YRKL+ KYHPDINK+P AE+KFK+++ AYEVL D +KR  YD+FG A     + G     QG
Sbjct:    2 AANKDYYDILGVSKDASDDEIKKAYRKLSKKYHPDINKAPDAEQKFKDVNEAYEVLGDSQKRAQYDQFGSADPNAGFGGGGFGGQG 87          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_MACCJ (Chaperone protein dnaJ OS=Macrococcus caseolyticus (strain JCSC5402) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = -2
Query:  166 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGM 381
            A  DYY  L + + A+ +EIK  Y+KL+ KYHPDINK   AE+KFKEI+ AYEVLSDD+K+  YD+FG AGM
Sbjct:    2 AKRDYYEVLGLSKGASKEEIKRAYKKLSKKYHPDINKEADAEDKFKEIAEAYEVLSDDQKKAQYDQFGHAGM 73          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTFA (Chaperone protein dnaJ OS=Enterococcus faecalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.334e-18
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = -2
Query:  148 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 384
            A   DYY  L + + A+  EIK  YRKL+ KYHPDINK   AEEKFKE+S AYEVLSD +K+  YD++G AG    Y G
Sbjct:    2 ATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDPQKKAAYDQYGHAGTDPNYGG 80          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  127 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGM-TGEYDGLSNTSQG 378
            G DYY  L +   A   EIK  YRK+A KYHPD NK P AEEKFKEI+ AY+VLSD +KR +YD++GE G+ TG   G S  S G
Sbjct:    2 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTG--GGTSGGSSG 84          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRU0 (Chaperone protein dnaJ OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T++Y  L V ++A+  EIK  YRK++ KYHPDINK PGAE+K+K++  AYE LSD +KR  YD++G AG  G + G
Sbjct:    4 TEFYDRLGVSKDASQDEIKKAYRKMSKKYHPDINKEPGAEQKYKDVQEAYETLSDAQKRSAYDQYGAAGAQGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP7 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.660e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  163 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMT 372
            DYY  L V ++A   EIK  YR+LA KYHPD+NK  GAEE+FKEI+ AYE+LS+ E R  YDRFGEAG++
Sbjct:    4 DYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRARYDRFGEAGVS 73          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  166 GTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGM 378
            G DYY  L +   A   EIK  YRK+A KYHPD NK P AEEKFKEI+ AY+VLSD +KR +YD++GE G+
Sbjct:    2 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGL 72          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STAAU3.318e-1860.81Chaperone protein dnaJ OS=Staphylococcus aureus GN... [more]
DNAJ2_THET83.318e-1863.77Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]
DNAJ_WOLPM4.334e-1853.93Chaperone protein dnaJ OS=Wolbachia pipientis wMel... [more]
DNAJ_PEDPA4.334e-1852.33Chaperone protein dnaJ OS=Pediococcus pentosaceus ... [more]
DNAJ_MACCJ4.334e-1859.72Chaperone protein dnaJ OS=Macrococcus caseolyticus... [more]
DNAJ_ENTFA4.334e-1855.70Chaperone protein dnaJ OS=Enterococcus faecalis GN... [more]
DNJB5_HUMAN5.660e-1856.47DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNAJ_STRU05.660e-1852.63Chaperone protein dnaJ OS=Streptococcus uberis (st... [more]
DNAJ_CYAP75.660e-1861.43Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNJB5_MOUSE7.393e-1859.15DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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