CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT2 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = -2
Query:  160 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 375
            T+YY  L + ++A+  EIK  YRKL+ KYHPDINK PGAEEK+KEI  AYE LSD +KR  YD++G  G  G
Sbjct:    4 TEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT1 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = -2
Query:  160 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 375
            T+YY  L + ++A+  EIK  YRKL+ KYHPDINK PGAEEK+KEI  AYE LSD +KR  YD++G  G  G
Sbjct:    4 TEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANG 75          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRPY (Chaperone protein dnaJ OS=Streptococcus pyogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  121 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 375
            T+YY  L V ++A+  +IK  YRK++ KYHPDINK  GAE+K+K++  AYE LSD +KR  YD++G AG  G + G +    G D
Sbjct:    4 TEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDINKEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP8 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M18 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  121 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 375
            T+YY  L V ++A+  +IK  YRK++ KYHPDINK  GAE+K+K++  AYE LSD +KR  YD++G AG  G + G +    G D
Sbjct:    4 TEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDINKEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP6 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M6 GN=dnaJ PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  121 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 375
            T+YY  L V ++A+  +IK  YRK++ KYHPDINK  GAE+K+K++  AYE LSD +KR  YD++G AG  G + G +    G D
Sbjct:    4 TEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDINKEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP3 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M3 GN=dnaJ PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  121 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 375
            T+YY  L V ++A+  +IK  YRK++ KYHPDINK  GAE+K+K++  AYE LSD +KR  YD++G AG  G + G +    G D
Sbjct:    4 TEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDINKEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRP1 (Chaperone protein dnaJ OS=Streptococcus pyogenes serotype M1 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.261e-17
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  121 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVD 375
            T+YY  L V ++A+  +IK  YRK++ KYHPDINK  GAE+K+K++  AYE LSD +KR  YD++G AG  G + G +    G D
Sbjct:    4 TEYYDRLGVSKDASQDDIKKAYRKMSKKYHPDINKEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFD 88          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRMU (Chaperone protein dnaJ OS=Streptococcus mutans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = -2
Query:  154 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 372
            +YY  L V ++A+  EIK  YR+++ KYHPDINK PGAEEK+KEI  AY+ L D++KR  YD++G AG  G +
Sbjct:    5 EYYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKEPGAEEKYKEIQEAYDTLGDEQKRAAYDQYGPAGANGGF 77          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACF3 (Chaperone protein dnaJ OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  127 AGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFG----EAGMTGEYDGLSNTSQG 381
            A  D Y  L V ++A+  EIK  YRKLA KYHPD+N  PGAE+KFK+I+ AYE LSDD+KR  YD+FG    +AG  G   G     QG
Sbjct:    2 AEEDLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVNHEPGAEKKFKKINEAYETLSDDQKRAQYDQFGTTGSQAGGFGGQGGFGGFGQG 90          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMP (Chaperone protein dnaJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.151e-17
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            D+Y  L V ++A    +K+ YRKLA +YHPD+NK PGAE+KFKEI  AYE L+D E R  YD+FGEAG+ G
Sbjct:    3 DFYQILGVSRDADANTLKSAYRKLARQYHPDVNKDPGAEDKFKEIGKAYEALADPETRARYDQFGEAGIGG 73          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STRT21.261e-1758.33Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRT11.261e-1758.33Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRPY1.261e-1748.24Chaperone protein dnaJ OS=Streptococcus pyogenes G... [more]
DNAJ_STRP81.261e-1748.24Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP61.261e-1748.24Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP31.261e-1748.24Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRP11.261e-1748.24Chaperone protein dnaJ OS=Streptococcus pyogenes s... [more]
DNAJ_STRMU1.647e-1753.42Chaperone protein dnaJ OS=Streptococcus mutans GN=... [more]
DNAJ_LACF31.647e-1752.81Chaperone protein dnaJ OS=Lactobacillus fermentum ... [more]
DNAJ_PROMP2.151e-1757.75Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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