CB304842 | Citrus Genome Database

Overview


Name	CB304842
Unique Name	CB304842
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	547

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.402e-20
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDC  V+
Sbjct:   54 VKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 41.2022 bits (95), Expect = 3.402e-20
Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   A+TCGQVTA LAPC+P+L+  G
Sbjct:   19 APHAEALTCGQVTAGLAPCLPYLQGRG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.746e-20
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C  V+
Sbjct:   31 IRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91

HSP 2 Score: 34.6538 bits (78), Expect = 9.746e-20
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = -3

Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ITCGQV+++LAPCI +++ GG
Sbjct:    1 ITCGQVSSNLAPCINYVKGGG 21

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.746e-19
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC RV
Sbjct:   60 VRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119

HSP 2 Score: 33.113 bits (74), Expect = 2.746e-19
Identity = 12/19 (63.16%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  471 ITCGQVTASLAPCIPFLRT 527
            +TCGQVT +LAPC+ +LR+
Sbjct:   28 LTCGQVTGALAPCLGYLRS 46

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.746e-19
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR+LN AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDC RV
Sbjct:   59 VRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118

HSP 2 Score: 34.2686 bits (77), Expect = 2.746e-19
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  480 APVTNAITCGQVTASLAPCIPF 545
            AP  +A+TCGQV + LAPCI +
Sbjct:   22 APAASAVTCGQVVSMLAPCIMY 43

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.571e-19
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            ++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC  V+
Sbjct:   60 IKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

HSP 2 Score: 33.4982 bits (75), Expect = 3.571e-19
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A+T GQVT SLAPCI +LR  G
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSG 48

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.593e-19
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            ++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC  V+
Sbjct:   56 IKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116

HSP 2 Score: 33.4982 bits (75), Expect = 3.593e-19
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A+T GQVT SLAPCI +LR  G
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSG 44

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.018e-18
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDC RV
Sbjct:   62 VRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121

HSP 2 Score: 30.4166 bits (67), Expect = 1.018e-18
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A+TCGQV++++ PC+ + R  G
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQG 51

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.040e-18
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = -1

Query:  251 LEGVFXXXXXXXXVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 472
            LEG          V+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDC  V+
Sbjct:   41 LEGRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 35.8094 bits (81), Expect = 1.040e-18
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   +++CG+VT+ LAPC+P+L   G
Sbjct:   19 APHAESLSCGEVTSGLAPCLPYLEGRG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.040e-18
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDC +V+
Sbjct:   54 VKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 36.965 bits (84), Expect = 1.040e-18
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = -3

Query:  453 APVTNAITCGQVTASLAPCIPFLRTGGRFSS 545
            AP   A++CGQV + LAPC+P+L+  G   S
Sbjct:   19 APHAEALSCGQVQSGLAPCLPYLQGRGPLGS 49

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.352e-18
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDC +V+
Sbjct:   54 VKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 40.4318 bits (93), Expect = 1.352e-18
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   A+TCGQVT++LAPC+P+L   G
Sbjct:   19 APHAEALTCGQVTSTLAPCLPYLMNRG 45

The following BLAST results are available for this feature:

BLAST of CB304842 vs. ExPASy Swiss-Prot

BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
NLTP1_SOLPN	3.402e-20	60.66	Non-specific lipid-transfer protein 1 OS=Solanum p...	[more]
NLTP1_PRUDO	9.746e-20	59.02	Non-specific lipid-transfer protein 1 OS=Prunus do...	[more]
NLTP_DAUCA	2.746e-19	61.67	Non-specific lipid-transfer protein OS=Daucus caro...	[more]
NLTP4_ORYSJ	2.746e-19	60.00	Non-specific lipid-transfer protein 4 OS=Oryza sat...	[more]
NLTP2_GOSHI	3.571e-19	62.30	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP1_GOSHI	3.593e-19	62.30	Non-specific lipid-transfer protein OS=Gossypium h...	[more]
NLTP2_SORBI	1.018e-18	68.33	Non-specific lipid-transfer protein 2 OS=Sorghum b...	[more]
NLTP2_SOLLC	1.040e-18	54.05	Non-specific lipid-transfer protein 2 OS=Solanum l...	[more]
NLTP2_TOBAC	1.040e-18	59.02	Non-specific lipid-transfer protein 2 OS=Nicotiana...	[more]
NLTP2_SOLPN	1.352e-18	57.38	Non-specific lipid-transfer protein 2 OS=Solanum p...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG