CB304842 | Citrus Genome Database

Overview


Name	CB304842
Unique Name	CB304842
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	547

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.298e-17
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   58 VRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.298e-17
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AI+CGQV ++++PC+ + R G
Sbjct:   27 AISCGQVNSAVSPCLSYARGG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.298e-17
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C  V+
Sbjct:   57 VKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117

HSP 2 Score: 30.4166 bits (67), Expect = 5.298e-17
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CG VT+ L+PC+ +L TGG
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGG 46

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.890e-17
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDC RV
Sbjct:   58 VRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117

HSP 2 Score: 26.9498 bits (58), Expect = 6.890e-17
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV++++A C+ + R  G
Sbjct:   26 AISCGQVSSAIALCLSYARGQG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.959e-17
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L  AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C  ++
Sbjct:   57 VKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117

HSP 2 Score: 34.6538 bits (78), Expect = 8.959e-17
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A++CG VT  LAPCIP+L TGG
Sbjct:   26 AVSCGTVTGDLAPCIPYL-TGG 46

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.061e-17
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = -1

Query:  263 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 433
            V+++  ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C
Sbjct:   31 VKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNC 87

HSP 2 Score: 31.5722 bits (70), Expect = 9.061e-17
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = -3

Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            +TCGQV  +LA CI FL+ GG
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG 21

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.061e-17
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V++LN  A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C  ++
Sbjct:   55 VKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115

HSP 2 Score: 33.113 bits (74), Expect = 9.061e-17
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = -3

Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            A V  AI+CG V  SLAPC  +L  GG
Sbjct:   19 ASVDAAISCGTVAGSLAPCATYLSKGG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.561e-16
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   56 VKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116

HSP 2 Score: 30.0314 bits (66), Expect = 2.561e-16
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CG VT  L+PC+ +L TGG
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.380e-16
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC +VR
Sbjct:   53 VRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113

HSP 2 Score: 30.8018 bits (68), Expect = 4.380e-16
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = -3

Query:  465 NAITCGQVTASLAPCIPFLRTGG 533
            +AITCGQV + L  C+ + R GG
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGG 43

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.231e-16
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   61 VRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123

HSP 2 Score: 30.8018 bits (68), Expect = 7.231e-16
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A++CGQV  +L PCI ++  GG
Sbjct:   30 AVSCGQVVNNLTPCINYVANGG 51

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.317e-16
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   56 VRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115

HSP 2 Score: 30.8018 bits (68), Expect = 7.317e-16
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AITCGQV +++ PC+ + R G
Sbjct:   25 AITCGQVNSAVGPCLTYARGG 45

The following BLAST results are available for this feature:

BLAST of CB304842 vs. ExPASy Swiss-Prot

BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
NLT2A_ORYSJ	5.298e-17	61.67	Non-specific lipid-transfer protein 2A OS=Oryza sa...	[more]
NLTP2_LENCU	5.298e-17	60.66	Non-specific lipid-transfer protein 2 OS=Lens culi...	[more]
NLTP1_SORBI	6.890e-17	65.00	Non-specific lipid-transfer protein 1 OS=Sorghum b...	[more]
NLTP3_LENCU	8.959e-17	55.74	Non-specific lipid-transfer protein 3 OS=Lens culi...	[more]
NLTP1_PHAAU	9.061e-17	57.89	Non-specific lipid-transfer protein 1 OS=Phaseolus...	[more]
NLTP3_ARATH	9.061e-17	50.82	Non-specific lipid-transfer protein 3 OS=Arabidops...	[more]
NLTP5_LENCU	2.561e-16	59.02	Non-specific lipid-transfer protein 5 OS=Lens culi...	[more]
SCA_LILLO	4.380e-16	54.10	Stigma/stylar cysteine-rich adhesin OS=Lilium long...	[more]
NLTP3_PRUDU	7.231e-16	58.73	Non-specific lipid-transfer protein 3 OS=Prunus du...	[more]
NLTP1_ORYSJ	7.317e-16	58.33	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG