CB304842 | Citrus Genome Database

Overview


Name	CB304842
Unique Name	CB304842
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	547

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB304842_ssr187	microsatellite	CB304842_ssr187:187..198.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803	contig	Csv1_Contig13803:118..663.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.317e-16
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DC RV
Sbjct:   56 VRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115

HSP 2 Score: 30.8018 bits (68), Expect = 7.317e-16
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = -3

Query:  468 AITCGQVTASLAPCIPFLRTG 530
            AITCGQV +++ PC+ + R G
Sbjct:   25 AITCGQVNSAVGPCLTYARGG 45

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.404e-16
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DC RV
Sbjct:   33 VRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93

HSP 2 Score: 30.4166 bits (67), Expect = 7.404e-16
Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = -3

Query:  447 AITCGQVTASLAPCIPFLRTGGRFSSTA 530
            AI+CGQV++++ PC+ + R  G   S +
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSAS 28

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.237e-15
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = -1

Query:  263 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 433
            ++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C
Sbjct:   57 IKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNC 113

HSP 2 Score: 34.2686 bits (77), Expect = 1.237e-15
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = -3

Query:  474 APVTNAITCGQVTASLAPCIPFLR 545
            AP+  AITCG V + LAPCI +L+
Sbjct:   21 APLAEAITCGLVASKLAPCIGYLQ 44

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.575e-15
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            V++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:   31 VKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90

HSP 2 Score: 30.4166 bits (67), Expect = 3.575e-15
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = -3

Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ++CG V   LAPCI +LR+ G
Sbjct:    1 LSCGDVATQLAPCINYLRSAG 21

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DC ++R
Sbjct:   58 VKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115

HSP 2 Score: 31.9574 bits (71), Expect = 7.854e-15
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV+++L+PCI + R  G
Sbjct:   26 AISCGQVSSALSPCISYARGNG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DC ++R
Sbjct:   58 VKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115

HSP 2 Score: 31.9574 bits (71), Expect = 7.854e-15
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV+++L+PCI + R  G
Sbjct:   26 AISCGQVSSALSPCISYARGNG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DC ++R
Sbjct:   58 VKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115

HSP 2 Score: 31.9574 bits (71), Expect = 7.854e-15
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV+++L+PCI + R  G
Sbjct:   26 AISCGQVSSALSPCISYARGNG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.878e-14
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            V+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC +V
Sbjct:   58 VKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117

HSP 2 Score: 31.9574 bits (71), Expect = 2.878e-14
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3

Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AI+CGQV+++L+PCI + R  G
Sbjct:   26 AISCGQVSSALSPCISYARGNG 47

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.923e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = -1

Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            V++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:   31 VKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90

HSP 2 Score: 25.409 bits (54), Expect = 4.923e-14
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = -3

Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ++CG V   +A CI +LR  G
Sbjct:    1 LSCGDVATQMASCINYLRGAG 21

[Close]

BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.318e-14
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1

Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   57 VTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117

HSP 2 Score: 28.1054 bits (61), Expect = 6.318e-14
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = -3

Query:  465 PVTN--AITCGQVTASLAPCIPFLRTGG 542
            P+T+  A++CG V+  +APCI +L   G
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNG 47

The following BLAST results are available for this feature:

BLAST of CB304842 vs. ExPASy Swiss-Prot

BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
NLTP1_ORYSI	7.317e-16	58.33	Non-specific lipid-transfer protein 1 OS=Oryza sat...	[more]
NLTP_ELECO	7.404e-16	59.02	Non-specific lipid-transfer protein OS=Eleusine co...	[more]
NLTP_BETVU	1.237e-15	54.39	Non-specific lipid-transfer protein OS=Beta vulgar...	[more]
NLTP5_VITSX	3.575e-15	55.00	Non-specific lipid-transfer protein P5 OS=Vitis sp...	[more]
NLT43_HORVU	7.854e-15	52.46	Non-specific lipid-transfer protein 4.3 OS=Hordeum...	[more]
NLT42_HORVU	7.854e-15	52.46	Non-specific lipid-transfer protein 4.2 OS=Hordeum...	[more]
NLT41_HORVU	7.854e-15	52.46	Non-specific lipid-transfer protein 4.1 OS=Hordeum...	[more]
NLTP3_HORVU	2.878e-14	50.00	Non-specific lipid-transfer protein 3 OS=Hordeum v...	[more]
NLTP3_VITSX	4.923e-14	56.67	Non-specific lipid-transfer protein P3 OS=Vitis sp...	[more]
NLTP2_BRANA	6.318e-14	57.38	Non-specific lipid-transfer protein 2 OS=Brassica ...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG