CB304842
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.342e-13 Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433 V +LN ARTTPDRQ AC CL A + + AAGLP CGV IPYKIS ST+C VR Sbjct: 57 VTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117 HSP 2 Score: 26.1794 bits (56), Expect = 2.342e-13 Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3 Query: 465 AITCGQVTASLAPCIPFLRTGG 530 A++CG V+ +LA CI +L G Sbjct: 26 ALSCGTVSGNLAACIGYLTQNG 47
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.342e-13 Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433 V SLN ARTTPDRQ AC CL A + I AAGLP CGV IPYKIS +T+C V+ Sbjct: 58 VTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118 HSP 2 Score: 26.5646 bits (57), Expect = 2.342e-13 Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = -3 Query: 477 PVTN--AITCGQVTASLAPCIPFL 542 P+T+ A++CG V+ +APCI +L Sbjct: 20 PITSNAALSCGTVSGYVAPCIGYL 43
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.043e-13 Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433 V SLN ARTTPDRQ AC CL A + I AAGLP CGV IPYKIS +T+C V+ Sbjct: 57 VTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117 HSP 2 Score: 26.1794 bits (56), Expect = 3.043e-13 Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3 Query: 465 AITCGQVTASLAPCIPFLRTGG 530 A++CG V+ +LA CI +L G Sbjct: 26 ALSCGTVSGNLAACIGYLTQNG 47
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.043e-13 Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433 V +LN ARTTPDRQ AC CL A + AAGLP CGV IPYKIS ST+C VR Sbjct: 57 VTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117 HSP 2 Score: 26.1794 bits (56), Expect = 3.043e-13 Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3 Query: 465 AITCGQVTASLAPCIPFLRTGG 530 A++CG V+ +LA CI +L G Sbjct: 26 ALSCGTVSGNLAACIGYLTQNG 47
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13 Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433 +RSL AAR DRQAAC C+K I I VAAGLP QC V IPYKISPS DC RV+ Sbjct: 60 IRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 5.137e-13 Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = -1 Query: 251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCFRVR 433 V LN ARTTPDRQ AC CL+ A R + PN+ AAG+P CGV +P+ IS +T+C V+ Sbjct: 57 VSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118 HSP 2 Score: 31.9574 bits (71), Expect = 5.137e-13 Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = -3 Query: 465 PVT--NAITCGQVTASLAPCIPFLRTGG 542 P+T A+TCG V +++APCI ++ GG Sbjct: 20 PITANRALTCGTVNSNVAPCIGYITQGG 47
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 8.604e-13 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = -1 Query: 263 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 433 V+SL A+TTPDR+ C CLK A I+G+ ++ A LP+ CGV IPY IS ST+C Sbjct: 56 VKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112 HSP 2 Score: 30.0314 bits (66), Expect = 8.604e-13 Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = -3 Query: 453 APVTNAITCGQVTASLAPCIPFLRTGGRFSS 545 +P + I CG VT++LA C+ +L G S Sbjct: 20 SPTESTIQCGTVTSTLAQCLTYLTNSGPLPS 50
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = -1 Query: 251 LHASLS*ELEGVFXXXXXXXXVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 496 L A + L+G V++LN A+TTPDRQ ACNC++ RA G+ G+ AAG+P CGV IPYKIS ST+C VR Sbjct: 36 LAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 4.228e-12 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = -1 Query: 254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433 V+ L G AR+T D+QA C CLK G + AAG+PS+CGV +PY IS S DC ++ Sbjct: 58 VKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114 HSP 2 Score: 30.0314 bits (66), Expect = 4.228e-12 Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -3 Query: 465 AITCGQVTASLAPCIPFLRTGG 530 AITCGQV+++L PC + + G Sbjct: 26 AITCGQVSSALGPCAAYAKGSG 47
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 5.372e-12 Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = -1 Query: 254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433 VR+LNG A ++ DR+ AC+CLK + R + AA +PS+CGV + + IS S DC ++ Sbjct: 61 VRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120 HSP 2 Score: 30.0314 bits (66), Expect = 5.372e-12 Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = -3 Query: 453 AITCGQVTASLAPCIPFLRTGGRFSS 530 A++CG VT+S+APC+ ++ GR SS Sbjct: 29 AVSCGDVTSSIAPCLSYVM--GRESS 52 The following BLAST results are available for this feature:
BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bpback to top |