CB304842

Overview
NameCB304842
Unique NameCB304842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304842_ssr187 microsatellite CB304842_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:118..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.342e-13
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   57 VTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          

HSP 2 Score: 26.1794 bits (56), Expect = 2.342e-13
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A++CG V+ +LA CI +L   G
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNG 47          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.342e-13
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   58 VTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          

HSP 2 Score: 26.5646 bits (57), Expect = 2.342e-13
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = -3
Query:  477 PVTN--AITCGQVTASLAPCIPFL 542
            P+T+  A++CG V+  +APCI +L
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYL 43          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.043e-13
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   57 VTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          

HSP 2 Score: 26.1794 bits (56), Expect = 3.043e-13
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A++CG V+ +LA CI +L   G
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNG 47          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.043e-13
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   57 VTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          

HSP 2 Score: 26.1794 bits (56), Expect = 3.043e-13
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A++CG V+ +LA CI +L   G
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNG 47          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   60 IRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.137e-13
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCFRVR 433
            V  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C  V+
Sbjct:   57 VSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          

HSP 2 Score: 31.9574 bits (71), Expect = 5.137e-13
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = -3
Query:  465 PVT--NAITCGQVTASLAPCIPFLRTGG 542
            P+T   A+TCG V +++APCI ++  GG
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGG 47          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.604e-13
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = -1
Query:  263 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 433
            V+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C
Sbjct:   56 VKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112          

HSP 2 Score: 30.0314 bits (66), Expect = 8.604e-13
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = -3
Query:  453 APVTNAITCGQVTASLAPCIPFLRTGGRFSS 545
            +P  + I CG VT++LA C+ +L   G   S
Sbjct:   20 SPTESTIQCGTVTSTLAQCLTYLTNSGPLPS 50          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  251 LHASLS*ELEGVFXXXXXXXXVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 496
            L A +   L+G          V++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   36 LAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.228e-12
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            V+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DC ++
Sbjct:   58 VKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          

HSP 2 Score: 30.0314 bits (66), Expect = 4.228e-12
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            AITCGQV+++L PC  + +  G
Sbjct:   26 AITCGQVSSALGPCAAYAKGSG 47          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.372e-12
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = -1
Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   61 VRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          

HSP 2 Score: 30.0314 bits (66), Expect = 5.372e-12
Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = -3
Query:  453 AITCGQVTASLAPCIPFLRTGGRFSS 530
            A++CG VT+S+APC+ ++   GR SS
Sbjct:   29 AVSCGDVTSSIAPCLSYVM--GRESS 52          
The following BLAST results are available for this feature:
BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTPB_BRAOT2.342e-1357.38Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTPD_BRAOT2.342e-1357.38Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_BRANA3.043e-1357.38Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA3.043e-1357.38Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP6_GOSHI3.214e-1360.66Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTPA_BRAOT5.137e-1349.23Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTPC_ARATH8.604e-1352.63Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_ARATH3.554e-1247.06Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP8_HORVU4.228e-1248.33Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_ORYSJ5.372e-1243.33Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG
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