CB304842

Overview
NameCB304842
Unique NameCB304842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304842_ssr187 microsatellite CB304842_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:118..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.372e-12
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = -1
Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   61 VRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          

HSP 2 Score: 30.0314 bits (66), Expect = 5.372e-12
Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = -3
Query:  453 AITCGQVTASLAPCIPFLRTGGRFSS 530
            A++CG VT+S+APC+ ++   GR SS
Sbjct:   29 AVSCGDVTSSIAPCLSYVM--GRESS 52          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.269e-12
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:   34 VRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          

HSP 2 Score: 26.5646 bits (57), Expect = 9.269e-12
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A+TC  VT +L PC+ +L+  G
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTG 22          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.269e-12
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:   34 VRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          

HSP 2 Score: 26.5646 bits (57), Expect = 9.269e-12
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  465 AITCGQVTASLAPCIPFLRTGG 530
            A+TC  VT +L PC+ +L+  G
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTG 22          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.003e-11
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DC R+
Sbjct:   57 VRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          

HSP 2 Score: 26.5646 bits (57), Expect = 2.003e-11
Identity = 8/21 (38.10%), Postives = 15/21 (71.43%), Query Frame = -3
Query:  468 AITCGQVTASLAPCIPFLRTG 530
            A+ CGQV + + PC+ +++ G
Sbjct:   26 ALNCGQVDSKMKPCLTYVQGG 46          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.388e-11
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = -1
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C  VR
Sbjct:   57 VTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          

HSP 2 Score: 24.6386 bits (52), Expect = 4.388e-11
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = -3
Query:  468 PVT-NAI-TCGQVTASLAPCIPFLRTG 542
            P+T NA+ +CG V  +LA CI +L  G
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRG 46          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 4.388e-11
Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = -1
Query:  263 RSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 430
            + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C
Sbjct:   58 KKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNC 112          

HSP 2 Score: 38.5058 bits (88), Expect = 4.388e-11
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = -3
Query:  462 AITCGQVTASLAPCIPFLRTGGR 530
            AITC  VT +L PC+P+LR+GG+
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK 48          
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  254 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 433
            VR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DC ++
Sbjct:   56 VRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
The following BLAST results are available for this feature:
BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NLTP3_ORYSI5.372e-1243.33Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP_AMACA9.269e-1249.18Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP9.269e-1249.18Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HORVU2.003e-1146.67Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH4.388e-1154.84Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_HELAN4.388e-1137.50Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP_GERHY6.702e-1151.67Non-specific lipid-transfer protein OS=Gerbera hyb... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG
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