CB304852

Overview
NameCB304852
Unique NameCB304852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 55/138 (39.86%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = -3
Query:  239 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 643
            W++     P+++KGVL  EDA  A   GA GI+VSNHG RQLD V ++  AL ++ +A   R+ V  DGGVR G DV + LALGA GV +GR   ++LA  G  GV ++L ++  E  + MAL+G  +L +I R+
Sbjct:  239 WIRDQWKGPLILKGVLDPEDAKAAADIGADGIVVSNHGGRQLDGVLSSARALPDIAEAVGDRLTVLADGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARGGPGVSQLLDLIEKEMRVAMALTGVNTLDQIDRS 373          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 57/138 (41.30%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  +DA  A+ +GA GI+VSNHG RQLD V +T  AL  +VQA    + V  D G+R G DV + LALGA GV +GR + ++L  DG+ GV  +L +   E  + M L+G  S+++I  + +V
Sbjct:  239 WIREFWQGPMIIKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKALPPIVQAVGSDLTVLADSGIRSGLDVVRMLALGAKGVLLGRSMAYALGADGQRGVENMLDIFAREMHVAMTLTGVTSIEQIDASILV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 58/138 (42.03%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++      +++KG+L  EDA  A+Q+GA GI+VSNHG RQLD V +T  AL  + +A K  + +  D GVR G DV + +A GA  V +GR   ++LA  GE GV  +L +  +E  + M L+G ++LKEIT   +V
Sbjct:  239 WIRDFWKGKMILKGILDPEDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEAVKNDLVILADSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLLDLFANEMRVAMTLTGAQTLKEITCESLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 52/138 (37.68%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD   ++  AL  +  A KG + +  D G+R G D+ + LALGA    +GR   ++L   G+AGV  +L + + E  + M L+  + + +ITR+ +V
Sbjct:  239 WIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 52/138 (37.68%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD   ++  AL  +  A KG + +  D G+R G D+ + LALGA    +GR   ++L   G+AGV  +L + + E  + M L+  + + +ITR+ +V
Sbjct:  239 WIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 52/138 (37.68%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD   ++  AL  +  A KG + +  D G+R G D+ + LALGA    +GR   ++L   G+AGV  +L + + E  + M L+  + + +ITR+ +V
Sbjct:  239 WIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDIKILADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGKAGVENMLDIFKKEMHVAMTLTSNQKISDITRDALV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G  GV  +L ++  E  + M L+G +S+ +I  + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTLTGAKSISDINADCLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G  GV  +L ++  E  + M L+G +S+ +I  + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTLTGAKSISDINADCLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G  GV  +L ++  E  + M L+G +S+ +I  + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTLTGAKSISDINTDCLV 376          
The following BLAST results are available for this feature:
BLAST of CB304852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALPC7.934e-2639.86L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_CAUSK7.934e-2644.44L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_PSEU21.036e-2541.30L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_BART11.353e-2542.03L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_ACTPJ6.717e-2537.68L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP76.717e-2537.68L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP26.717e-2537.68L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACIBY6.717e-2539.86L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBT6.717e-2539.86L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBS6.717e-2539.86L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304852 ID=CB304852; Name=CB304852; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATAAAAAGCCCCAAGCC
AAGCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAA
CAAAATGCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGT
TTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTG
GCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGGGGTTGCGTGTAAT
CTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCAT
CACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCC
AGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAAAGC
CAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAA
CAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACA
GTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAATGAT
TCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTAAGAA
CACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACT
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