CB304852

Overview
NameCB304852
Unique NameCB304852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:774..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 59/139 (42.45%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  227 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVT 643
            W++      +++KG+L  EDA  AIQ+GA GI+VSNHG RQLD V +TV AL  + +A K  + + +D GVR G DV + +A GA  V +GR   ++LA  GE GV  ++ +  +E  + M L+G R++KEITR  + +
Sbjct:  239 WIRDFWKGKMILKGILDPEDAREAIQFGADGIVVSNHGGRQLDGVLSTVRALPAIAEAVKSDLTILVDSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITRESLAS 377          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 55/138 (39.86%), Postives = 90/138 (65.22%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+ GV  +L ++  E ++ M L+G ++++EI+R+ +V
Sbjct:  239 WIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKTIREISRDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 58/138 (42.03%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GIIVSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +A GA GV +GR   ++LA  G+AGV  +L +   E  + M L+G RS+ EI+ + +V
Sbjct:  239 WIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.372e-27
Identity = 56/137 (40.88%), Postives = 88/137 (64.23%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+ + +
Sbjct:  239 WIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADAL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.372e-27
Identity = 56/137 (40.88%), Postives = 88/137 (64.23%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+ + +
Sbjct:  239 WIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADAL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.372e-27
Identity = 56/137 (40.88%), Postives = 88/137 (64.23%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+ + +
Sbjct:  239 WIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISADAL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
The following BLAST results are available for this feature:
BLAST of CB304852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_BARHE5.495e-2742.45L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_KLEP37.176e-2739.86L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_AGRVS7.176e-2742.03L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_XANOR9.372e-2740.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP9.372e-2740.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM9.372e-2740.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_YERPY1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304852 ID=CB304852; Name=CB304852; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATAAAAAGCCCCAAGCC
AAGCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAA
CAAAATGCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGT
TTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTG
GCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGGGGTTGCGTGTAAT
CTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCAT
CACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCC
AGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAAAGC
CAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAA
CAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACA
GTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAATGAT
TCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTAAGAA
CACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACT
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