CB304852

Overview
NameCB304852
Unique NameCB304852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPG (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  239 WVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 56/138 (40.58%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +F+D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +++ +++R+ +V
Sbjct:  239 WIRDFWDGPMVIKGILDEEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAKALPSIADAVKGDLKIFVDSGIRTGLDVVRMLALGADCTLLGRSFVYALAAQGGAGVENLLDLYDKEMRVAMTLTGAKTIADLSRDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  227 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVT 643
            W++     P+++KG+L  +DA  A+++GA GI+VSNHG RQLD V +T  AL  +  A +G + +  D G+R G DV + LALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G R + +I R+ +V+
Sbjct:  239 WIREFWKGPMVIKGILDPDDARDAVRFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRDSLVS 377          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  230 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIV 643
            W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  239 WIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
The following BLAST results are available for this feature:
BLAST of CB304852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPG1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPE1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPB1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA1.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP31.599e-2640.88L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_VIBPA1.599e-2640.58L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_STRMK2.088e-2641.01L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_SALTY2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPB2.088e-2640.58L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304852 ID=CB304852; Name=CB304852; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATAAAAAGCCCCAAGCC
AAGCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAA
CAAAATGCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGT
TTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTG
GCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGGGGTTGCGTGTAAT
CTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCAT
CACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCC
AGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAAAGC
CAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAA
CAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACA
GTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAATGAT
TCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTAAGAA
CACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACT
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