CB304865

Overview
NameCB304865
Unique NameCB304865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK18_ORYSJ (Potassium transporter 18 OS=Oryza sativa subsp. japonica GN=HAK18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  215 VREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 433
            V +E+  L   ++AG+ +I+G++ ++ARR S FVK+ +I+ +Y+FLRK CR  S   N+P  S++ VG ++YV
Sbjct:  721 VGDEIAFLNACRDAGVVHILGNTVIRARRDSGFVKKIVINYMYAFLRKICRENSAIFNVPHESMLNVGQVFYV 793          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK23_ORYSJ (Potassium transporter 23 OS=Oryza sativa subsp. japonica GN=HAK23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  215 DPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 442
            DP +  EL  L +A  +G  Y++ H  V+AR+ S F K+F+I+  Y+FLR+NCR  +  L +P  +++ VGM Y V
Sbjct:  802 DPSLEYELESLREAIASGFTYLLAHGDVRARKESFFTKKFIINYFYAFLRRNCRAGTATLKVPHSNIMRVGMTYMV 877          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT13_ARATH (Potassium transporter 13 OS=Arabidopsis thaliana GN=POT13 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = -3
Query:  215 PVRRRQVRFQLPSDPG----MDPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 493
            P+ RR+      + P     ++  + +EL  + +AKE+G+ Y++GH  ++A + S F+K+ +I+ LY+FLRKN R     L++P   L++VGM Y V
Sbjct:  759 PMERRKASIDFGAGPSSALDVEQSLEKELSFIHKAKESGVVYLLGHGDIRATKDSWFLKKLVINYLYAFLRKNSRRGITNLSVPHTHLMQVGMTYMV 855          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT10_ARATH (Putative potassium transporter 10 OS=Arabidopsis thaliana GN=POT10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = -3
Query:  215 KEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 400
            ++AG+ +IMG++ V+ARR + F KR  ID +Y+FLRK CR  S   N+P  SL+ VG I+YV
Sbjct:  726 RDAGVVHIMGNTVVRARREARFYKRIAIDYVYAFLRKICRENSAIFNVPQESLLNVGQIFYV 787          
The following BLAST results are available for this feature:
BLAST of CB304865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HAK18_ORYSJ1.003e-1141.10Potassium transporter 18 OS=Oryza sativa subsp. ja... [more]
HAK23_ORYSJ1.711e-1140.79Potassium transporter 23 OS=Oryza sativa subsp. ja... [more]
POT13_ARATH2.235e-1135.05Potassium transporter 13 OS=Arabidopsis thaliana G... [more]
POT10_ARATH2.235e-1150.00Putative potassium transporter 10 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304865 ID=CB304865; Name=CB304865; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGAGAAAGGAAGCTTCTT
TATGAATTACCTGCAACAAGAGTCTATTTAACATACATGCGTTCAGCTTA
CATTCCACCCCAACAGGAAAGACAAGATGCCTCCTTATGCACCCTCTCAA
AATTATGACTGGCATCGACCAAGGATGATAGACCCTTTTTCATTTTTCAT
AATTTATCTAACTAAACATAGTATATCATGCCAACTTCAATGAGGCTAAT
GGGGGGGATGTTTAGTGCAACAGAAGGGCCCCTGCAGTTCTTCCGAAGAA
ATGAATACAAGATATCAATCATAAACCTTTTCACAAATGAGGATGATCTC
CTAGCCTTCACATAGGAGTGACCCATTATGTAAGCAATTCCAGCTTCCTT
GGCCTGGATCAAATCCATCAGCTCTTCCCTCACTACAGGATCCATTCCAG
GATCTGATGGTAACTGAAACCTCACCTGCCGCCTCCTGACTGGATTATCC
TCATCAAAAACAGATTGCAAACTCTGAAGAGTTAAAGATTTGCTGCTCTG
GATGGAGCTGCTCGAACCAATATCCTCTTCTTGTACAGATATTATCAGGT
TCGTGCTTGATCAAC
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