CB304888

Overview
NameCB304888
Unique NameCB304888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MG  N+W SHP+ YG GSR+CR C N H IIRKYGL  CRQCFR
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H +VWNS P+TYG GSR+CRVC +   +IRKYGL  CRQCFR K
Sbjct:    1 MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREK 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_ASHGO (40S ribosomal protein S29 OS=Ashbya gossypii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H NVW SHP+ YG GSR CRVC +   +IRKYGL  CRQCFR K
Sbjct:    1 MAHENVWFSHPRNYGKGSRQCRVCASHSGLIRKYGLNICRQCFREK 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29A_YEAST (40S ribosomal protein S29-A OS=Saccharomyces cerevisiae GN=RPS29A PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H NVW SHP+ YG GSR CRVC +   +IRKYGL  CRQCFR K
Sbjct:    1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREK 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H +VWNS P+TYG G+R+CRVC +   +IRKYGL  CRQCFR K
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREK 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_DROME (40S ribosomal protein S29 OS=Drosophila melanogaster GN=RpS29 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MG + +W SHP+ YG GSR CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_RAT (40S ribosomal protein S29 OS=Rattus norvegicus GN=Rps29 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_PONAB (40S ribosomal protein S29 OS=Pongo abelii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_MOUSE (40S ribosomal protein S29 OS=Mus musculus GN=Rps29 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
The following BLAST results are available for this feature:
BLAST of CB304888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS29_LYSTE4.453e-1368.1840S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]
RS29_NEUCR7.596e-1365.2240S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_ASHGO9.920e-1365.2240S ribosomal protein S29 OS=Ashbya gossypii GN=RP... [more]
RS29A_YEAST1.692e-1265.2240S ribosomal protein S29-A OS=Saccharomyces cerev... [more]
RS29_MAGGR2.886e-1263.0440S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_DROME3.770e-1263.6440S ribosomal protein S29 OS=Drosophila melanogast... [more]
RS29_RAT6.430e-1263.6440S ribosomal protein S29 OS=Rattus norvegicus GN=... [more]
RS29_PONAB6.430e-1263.6440S ribosomal protein S29 OS=Pongo abelii GN=RPS29... [more]
RS29_MOUSE6.430e-1263.6440S ribosomal protein S29 OS=Mus musculus GN=Rps29... [more]
RS29_ICTPU6.430e-1263.6440S ribosomal protein S29 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304888 ID=CB304888; Name=CB304888; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGAATGATTAAGCCTT
AATAAGAATGATCAATGATATTCTTAGTCCAACAATTGCTTTGTCAAACA
TTGAATCAATTTAAGACAAAACATCGCTTAACAATCCTTGAGAAACAGAA
ATTCGCTACAGGTATCACAGATAAACAAAATCAGCATGGTACTGGTAACC
CCCCTTCTGATGTTGACAACATGTTAATCATTTAGCGGTACTTAACAAAA
CCAATCTCCTTGGCATTTGCTACGGAAGCATTGTCTGCAGCACATGAGCC
CATACTTCCTGATTATTGCATGAGGATTCCCACAAACCCGGCAAGCGCGA
GAACCGGGGCCGTAAGTCTTGGGGTGAGAGTTCCAAACGTTGGAGTGACC
CATGATTGATTGTTTTCTCCTTCCTTGACAAAAAGAAAAGCCGGTTCGCT
TAAGCTTGTGTAAAACCCTAAAATCTGCTGAGGAATTTCAACGAATCCC
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