CB304888

Overview
NameCB304888
Unique NameCB304888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_HUMAN (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_CULQU (40S ribosomal protein S29 OS=Culex quinquefasciatus GN=RpS29 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MG +++W SHP+ YG GSR CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGFADLWYSHPRKYGQGSRFCRACSNNHGMIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_BOVIN (40S ribosomal protein S29 OS=Bos taurus GN=RPS29 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29B_YEAST (40S ribosomal protein S29-B OS=Saccharomyces cerevisiae GN=RPS29B PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H NVW SHP+ +G GSR CRVC +   ++RKY L  CRQCFR K
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREK 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_CANGA (40S ribosomal protein S29 OS=Candida glabrata GN=RPS29 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = -1
Query:  266 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSK 403
            M H NVW SHP+ +G GSR CRVC +   +IRKY L  CRQCFR +
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLIRKYDLNICRQCFRER 46          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_DICDI (40S ribosomal protein S29 OS=Dictyostelium discoideum GN=rps29 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = -1
Query:  248 VWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSKCQGDWF 388
            +W +HP+ +GPGSR CR CGN H IIRKY L  CR+CFR+  +   F
Sbjct:    5 LWLTHPRNFGPGSRTCRKCGNHHGIIRKYDLNMCRRCFRTDAEAIGF 51          
The following BLAST results are available for this feature:
BLAST of CB304888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS29_HUMAN6.430e-1263.6440S ribosomal protein S29 OS=Homo sapiens GN=RPS29... [more]
RS29_HIPCM6.430e-1263.6440S ribosomal protein S29 OS=Hippocampus comes GN=... [more]
RS29_CULQU6.430e-1263.6440S ribosomal protein S29 OS=Culex quinquefasciatu... [more]
RS29_BOVIN6.430e-1263.6440S ribosomal protein S29 OS=Bos taurus GN=RPS29 P... [more]
RS29B_YEAST4.168e-1158.7040S ribosomal protein S29-B OS=Saccharomyces cerev... [more]
RS29_CANGA7.109e-1158.7040S ribosomal protein S29 OS=Candida glabrata GN=R... [more]
RS29_DICDI9.285e-1155.3240S ribosomal protein S29 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304888 ID=CB304888; Name=CB304888; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGAATGATTAAGCCTT
AATAAGAATGATCAATGATATTCTTAGTCCAACAATTGCTTTGTCAAACA
TTGAATCAATTTAAGACAAAACATCGCTTAACAATCCTTGAGAAACAGAA
ATTCGCTACAGGTATCACAGATAAACAAAATCAGCATGGTACTGGTAACC
CCCCTTCTGATGTTGACAACATGTTAATCATTTAGCGGTACTTAACAAAA
CCAATCTCCTTGGCATTTGCTACGGAAGCATTGTCTGCAGCACATGAGCC
CATACTTCCTGATTATTGCATGAGGATTCCCACAAACCCGGCAAGCGCGA
GAACCGGGGCCGTAAGTCTTGGGGTGAGAGTTCCAAACGTTGGAGTGACC
CATGATTGATTGTTTTCTCCTTCCTTGACAAAAAGAAAAGCCGGTTCGCT
TAAGCTTGTGTAAAACCCTAAAATCTGCTGAGGAATTTCAACGAATCCC
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